RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ATP6AP1LQ52LC2 224 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 ZNF470Q6ECI4 717 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 CENPTQ96BT3 561 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 GLIS2Q9BZE0 524 aaPredicted RBP14.37□□□□□ -0.11
CPSF1-212ENST00000616140 LRRC19Q9H756 370 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 RNF19AQ9NV58 838 aa14.37□□□□□ -0.11
CPSF1-212ENST00000616140 MRPL42Q9Y6G3 142 aaKnown RBP14.37□□□□□ -0.11
CPSF1-212ENST00000616140 GLP2RO95838 553 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 PROCP04070 461 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 SCNN1BP51168 640 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 PLK1P53350 603 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 NFE2Q16621 373 aaPredicted RBP14.36□□□□□ -0.11
CPSF1-212ENST00000616140 ARSHQ5FYA8 562 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 CACHD1Q5VU97 1274 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 SLC27A1Q6PCB7 646 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 OTOAQ7RTW8 1153 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 SEMA4DQ92854 862 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 TMEM169Q96HH4 297 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 PURBQ96QR8 312 aaKnown RBP14.36□□□□□ -0.11
CPSF1-212ENST00000616140 HPS4Q9NQG7 708 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 BTNL10A8MVZ5 291 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 SPTLC1O15269 473 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 PLA2G6O60733 806 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 WDR47O94967 919 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 CYP1A2P05177 515 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 NR2C2P49116 596 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 ALDH7A1P49419 539 aaKnown RBP14.36□□□□□ -0.11
CPSF1-212ENST00000616140 CDK16Q00536 496 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 AARS2Q5JTZ9 985 aaKnown RBP14.36□□□□□ -0.11
CPSF1-212ENST00000616140 GPR141Q7Z602 305 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 YTHDF3Q7Z739 585 aaKnown RBP14.36□□□□□ -0.11
CPSF1-212ENST00000616140 IL31RAQ8NI17 732 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 DNAJB3Q8WWF6 145 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 APBA2Q99767 749 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 CLPBQ9H078 707 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 PIF1Q9H611 641 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 IMPAD1Q9NX62 359 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 APPL1Q9UKG1 709 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 NEURL4Q96JN8 1562 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 NUDT17P0C025 328 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 TPBGLP0DKB5 382 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 OAZ1P54368 228 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 DEPDC1Q5TB30 811 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 FGFBP2Q9BYJ0 223 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 SLCO1B3Q9NPD5 702 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 SAR1AQ9NR31 198 aa14.36□□□□□ -0.11
CPSF1-212ENST00000616140 PAPOLBQ9NRJ5 636 aaKnown RBP14.36□□□□□ -0.11
CPSF1-212ENST00000616140 DCCP43146 1447 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 KANSL1LA0AUZ9 987 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 ARHGEF9O43307 516 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 CKMP06732 381 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 GLRA2P23416 452 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 SOAT1P35610 550 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 ZACNQ401N2 412 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 CTXN3Q4LDR2 81 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 SLC45A4Q5BKX6 768 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 EXOC3L1Q86VI1 746 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 ZDHHC17Q8IUH5 632 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 USP6NLQ92738 828 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 FZD1Q9UP38 647 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 AP4S1Q9Y587 144 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 POMCP01189 267 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 UBA1P22314 1058 aaKnown RBP14.35□□□□□ -0.11
CPSF1-212ENST00000616140 RPL22P35268 128 aaKnown RBP14.35□□□□□ -0.11
CPSF1-212ENST00000616140 GTF2A2P52657 109 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 OXCT1P55809 520 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 B4GALNT2Q8NHY0 566 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 LRRC39Q96DD0 335 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 PTPRHQ9HD43 1115 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 NCANO14594 1321 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 SIGLEC16A6NMB1 481 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 LIASO43766 372 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 PGAM1P18669 254 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 CHKAP35790 457 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 PRIM2P49643 509 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 NUP107P57740 925 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 KCNJ2P63252 427 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 NR6A1Q15406 480 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 CCDC153Q494R4 210 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 OVOS1Q6IE37 1185 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 LRRC74BQ6ZQY2 392 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 SNX32Q86XE0 403 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 APLFQ8IW19 511 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-212ENST00000616140 TNIP2Q8NFZ5 429 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 AGAP11Q8TF27 550 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 PLEKHA8Q96JA3 519 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 NRDE2Q9H7Z3 1164 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 PDGFCQ9NRA1 345 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 ATP11BQ9Y2G3 1177 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 SERPINF2P08697 491 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 YBX3P16989 372 aaKnown RBP eCLIP14.35□□□□□ -0.117e-7■□□□□ 11
CPSF1-212ENST00000616140 OR5B17Q8NGF7 314 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 COLEC11Q9BWP8 271 aa14.35□□□□□ -0.11
CPSF1-212ENST00000616140 CNTNAP2Q9UHC6 1331 aa14.34□□□□□ -0.11
CPSF1-212ENST00000616140 A0A0B4J269 797 aa14.34□□□□□ -0.11
CPSF1-212ENST00000616140 CBX4O00257 560 aa14.34□□□□□ -0.11
CPSF1-212ENST00000616140 SMNDC1O75940 238 aaKnown RBP eCLIP14.34□□□□□ -0.112e-8■■■□□ 17.5
CPSF1-212ENST00000616140 UNC5CO95185 931 aa14.34□□□□□ -0.11
CPSF1-212ENST00000616140 CRTAMO95727 393 aa14.34□□□□□ -0.11
CPSF1-212ENST00000616140 ALADP13716 330 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms