RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 C3orf49Q96BT1 292 aa4.9□□□□□ -1.63
SMCHD1-213ENST00000609587 GCC1Q96CN9 775 aa4.9□□□□□ -1.63
SMCHD1-213ENST00000609587 MCRS1Q96EZ8 462 aa4.9□□□□□ -1.63
SMCHD1-213ENST00000609587 PRR11Q96HE9 360 aaPredicted RBP4.9□□□□□ -1.63
SMCHD1-213ENST00000609587 TRAPPC9Q96Q05 1148 aa4.9□□□□□ -1.63
SMCHD1-213ENST00000609587 DDX23Q9BUQ8 820 aaKnown RBP4.9□□□□□ -1.63
SMCHD1-213ENST00000609587 CIPCQ9C0C6 399 aa4.9□□□□□ -1.63
SMCHD1-213ENST00000609587 VPS16Q9H269 839 aa4.9□□□□□ -1.63
SMCHD1-213ENST00000609587 TAF1DQ9H5J8 278 aaPredicted RBP4.9□□□□□ -1.63
SMCHD1-213ENST00000609587 SEPSECSQ9HD40 501 aaKnown RBP4.9□□□□□ -1.63
SMCHD1-213ENST00000609587 IL17RBQ9NRM6 502 aa4.9□□□□□ -1.63
SMCHD1-213ENST00000609587 ARPP21Q9UBL0 812 aaPredicted RBP4.9□□□□□ -1.63
SMCHD1-213ENST00000609587 DAPP1Q9UN19 280 aa4.9□□□□□ -1.63
SMCHD1-213ENST00000609587 C19orf53Q9UNZ5 99 aaPredicted RBP4.9□□□□□ -1.63
SMCHD1-213ENST00000609587 UBE2J1Q9Y385 318 aaPredicted RBP4.9□□□□□ -1.63
SMCHD1-213ENST00000609587 PCDHB7Q9Y5E2 793 aa4.9□□□□□ -1.63
SMCHD1-213ENST00000609587 PCDHB2Q9Y5E7 798 aa4.9□□□□□ -1.63
SMCHD1-213ENST00000609587 CCDC187A0A096LP49 1063 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 CCDC189A1A4V9 331 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 H0Y3Z8 333 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 EXOC3O60645 756 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 RBMXL2O75526 392 aaKnown RBP4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 LARGE1O95461 756 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 TMIGD3P0DMS9 266 aaPredicted RBP4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 ADD2P35612 726 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 IGHMBP2P38935 993 aaKnown RBP4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 COPB1P53618 953 aaKnown RBP4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 CYP4F2P78329 520 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 SF3A3Q12874 501 aaKnown RBP eCLIP4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 CBFBQ13951 182 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 ZNF569Q5MCW4 686 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 ANKRD45Q5TZF3 282 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 ANKRD40Q6AI12 368 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 CEP85Q6P2H3 762 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 C1QL2Q7Z5L3 287 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 ARHGEF25Q86VW2 580 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 C12orf76Q8N812 135 aaPredicted RBP4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 TERB1Q8NA31 727 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 CPT1BQ92523 772 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 SARAFQ96BY9 339 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 REXO5Q96IC2 774 aaKnown RBP4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 ZSCAN31Q96LW9 406 aaPredicted RBP4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 MMS19Q96T76 1030 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 CCDC134Q9H6E4 229 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 CPNE5Q9HCH3 593 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 VPS45Q9NRW7 570 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 TFCP2L1Q9NZI6 479 aa4.89□□□□□ -1.63
SMCHD1-213ENST00000609587 M0QZQ0 153 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 ZNF213O14771 459 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 PRAMEF2O60811 474 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 FAM155BO75949 473 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 HNRNPCP07910 306 aaKnown RBP eCLIP4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 THBS4P35443 961 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 PRKAA2P54646 552 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 GPC5P78333 572 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 CUL4BQ13620 913 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 FAM187BQ17R55 369 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 TTC22Q5TAA0 569 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 ACSM6Q6P461 480 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 RINLQ6ZS11 566 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 FTSJ3Q8IY81 847 aaKnown RBP4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 OR6Y1Q8NGX8 325 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 SPPL3Q8TCT6 385 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 DAZAP1Q96EP5 407 aaKnown RBP4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 EDC3Q96F86 508 aaKnown RBP4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 FAR2Q96K12 515 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 SNX18Q96RF0 628 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 MACROD1Q9BQ69 325 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 MECRQ9BV79 373 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 KCNK9Q9NPC2 374 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 ASB6Q9NWX5 421 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 NDUFAF4Q9P032 175 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 VPS4AQ9UN37 437 aa4.88□□□□□ -1.63
SMCHD1-213ENST00000609587 LOC105369274A0A096LPK9 316 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 LOC102723532A0A0G2JNH3 316 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 LRRC3CA6NJW4 275 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 M0QYT0 321 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 APEHP13798 732 aaKnown RBP4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 GPD1P21695 349 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 SERPINA4P29622 427 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 GALNSP34059 522 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 AARSP49588 968 aaKnown RBP eCLIP4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 RGS19P49795 217 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 CDK7P50613 346 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 JAK3P52333 1124 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 RAE1P78406 368 aaKnown RBP4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 HOXA4Q00056 320 aaPredicted RBP4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 CFHR3Q02985 330 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 RNASELQ05823 741 aaKnown RBP4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 AAK1Q2M2I8 961 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 TMEM63BQ5T3F8 832 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 C16orf89Q6UX73 402 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 TRIM72Q6ZMU5 477 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 BCDIN3DQ7Z5W3 292 aaKnown RBP4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 OR4N4Q8N0Y3 316 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 ZNF366Q8N895 744 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 Q8N9P0 234 aaPredicted RBP4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 OR52L2PQ8NGH6 319 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 CSGALNACT1Q8TDX6 532 aa4.87□□□□□ -1.63
SMCHD1-213ENST00000609587 AFG1LQ8WV93 481 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms