RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 SLC39A13Q96H72 371 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 FCRL2Q96LA5 508 aaPredicted RBP16.02■□□□□ 0.16
UPF1-206ENST00000598471 HAPLN3Q96S86 360 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 EPAS1Q99814 870 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 PRDM16Q9HAZ2 1276 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 MYO9BQ13459 2157 aa16.02■□□□□ 0.15
UPF1-206ENST00000598471 hCG_1818297A0A087WSY0 165 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 TRAV19A0A0A6YYK7 116 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 A0A1W2PRU2 124 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 C2orf78A6NCI8 922 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 C3orf70A6NLC5 250 aaPredicted RBP16.01■□□□□ 0.15
UPF1-206ENST00000598471 CCDC188H7C350 402 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 KRIT1O00522 736 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 MOCS2O96007 188 aaPredicted RBP16.01■□□□□ 0.15
UPF1-206ENST00000598471 IGLV3-27P01718 113 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 IGFBP4P22692 258 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 HTR7P34969 479 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 HARS2P49590 506 aaKnown RBP16.01■□□□□ 0.15
UPF1-206ENST00000598471 ARSEP51690 589 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 CYP4F8P98187 520 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 ITIH3Q06033 890 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 HYAL1Q12794 435 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 KCNC3Q14003 757 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 DPYSL3Q14195 570 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 TAZQ16635 292 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 CA9Q16790 459 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 KAZNQ674X7 775 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 RFX6Q8HWS3 928 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 ZNF707Q96C28 371 aaPredicted RBP16.01■□□□□ 0.15
UPF1-206ENST00000598471 BTN2A3PQ96KV6 586 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 KCTD15Q96SI1 283 aaPredicted RBP16.01■□□□□ 0.15
UPF1-206ENST00000598471 OSBPL2Q9H1P3 480 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 HCFC1R1Q9NWW0 138 aa16.01■□□□□ 0.15
UPF1-206ENST00000598471 DNMT3BQ9UBC3 853 aaKnown RBP16.01■□□□□ 0.15
UPF1-206ENST00000598471 ATG2AQ2TAZ0 1938 aa16■□□□□ 0.15
UPF1-206ENST00000598471 KCNU1A8MYU2 1149 aa16■□□□□ 0.15
UPF1-206ENST00000598471 PDE2AO00408 941 aaPredicted RBP16■□□□□ 0.15
UPF1-206ENST00000598471 EEF2KO00418 725 aaKnown RBP16■□□□□ 0.15
UPF1-206ENST00000598471 PAGE1O75459 146 aa16■□□□□ 0.15
UPF1-206ENST00000598471 PAPLNO95428 1278 aa16■□□□□ 0.15
UPF1-206ENST00000598471 OLFM2O95897 454 aa16■□□□□ 0.15
UPF1-206ENST00000598471 CKMP06732 381 aa16■□□□□ 0.15
UPF1-206ENST00000598471 HMBSP08397 361 aa16■□□□□ 0.15
UPF1-206ENST00000598471 ZFXP17010 805 aaPredicted RBP16■□□□□ 0.15
UPF1-206ENST00000598471 HDCP19113 662 aa16■□□□□ 0.15
UPF1-206ENST00000598471 TUBB4BP68371 445 aa16■□□□□ 0.15
UPF1-206ENST00000598471 TXNDC8Q6A555 127 aa16■□□□□ 0.15
UPF1-206ENST00000598471 TMEM184AQ6ZMB5 413 aa16■□□□□ 0.15
UPF1-206ENST00000598471 GRASPQ7Z6J2 395 aaPredicted RBP16■□□□□ 0.15
UPF1-206ENST00000598471 SPATA4Q8NEY3 305 aa16■□□□□ 0.15
UPF1-206ENST00000598471 SHKBP1Q8TBC3 707 aa16■□□□□ 0.15
UPF1-206ENST00000598471 HEMGNQ9BXL5 484 aa16■□□□□ 0.15
UPF1-206ENST00000598471 HOMER3Q9NSC5 361 aa16■□□□□ 0.15
UPF1-206ENST00000598471 SMARCAL1Q9NZC9 954 aa16■□□□□ 0.15
UPF1-206ENST00000598471 MTCH2Q9Y6C9 303 aa16■□□□□ 0.15
UPF1-206ENST00000598471 CHD9Q3L8U1 2897 aa16■□□□□ 0.15
UPF1-206ENST00000598471 DAPK3O43293 454 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 CREB3O43889 395 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 CD48P09326 243 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 KRT10P13645 584 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 HOXB8P17481 243 aaPredicted RBP15.99■□□□□ 0.15
UPF1-206ENST00000598471 SLC11A2P49281 568 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 TPI1P60174 286 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 SLC7A9P82251 487 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 ANKRD20A8PQ5CZ79 823 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 GPR158Q5T848 1215 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 TMC5Q6UXY8 1006 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 BBS12Q6ZW61 710 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 ADAT2Q7Z6V5 191 aaKnown RBP15.99■□□□□ 0.15
UPF1-206ENST00000598471 DDX42Q86XP3 938 aaKnown RBP eCLIP15.99■□□□□ 0.15
UPF1-206ENST00000598471 PYROXD2Q8N2H3 581 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 ARL14EPQ8N8R7 260 aaPredicted RBP15.99■□□□□ 0.15
UPF1-206ENST00000598471 MAB21L3Q8N8X9 362 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 TTC13Q8NBP0 860 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 VN1R2Q8NFZ6 395 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 FAF2Q96CS3 445 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 CSPG4P5Q96PW8 444 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 RNF157Q96PX1 679 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 GAS2L1Q99501 681 aaPredicted RBP15.99■□□□□ 0.15
UPF1-206ENST00000598471 KLF16Q9BXK1 252 aaPredicted RBP15.99■□□□□ 0.15
UPF1-206ENST00000598471 DCLK3Q9C098 648 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 SLITRK6Q9H5Y7 841 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 TASP1Q9H6P5 420 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 STIM2Q9P246 746 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 OR12D3Q9UGF7 316 aa15.99■□□□□ 0.15
UPF1-206ENST00000598471 MRPS23Q9Y3D9 190 aaKnown RBP15.99■□□□□ 0.15
UPF1-206ENST00000598471 APOL1O14791 398 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 CST8O60676 142 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 LATS1O95835 1130 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 FOSL2P15408 326 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 GTF2F1P35269 517 aaKnown RBP eCLIP15.98■□□□□ 0.15
UPF1-206ENST00000598471 AVPR1AP37288 418 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 HCAR3P49019 387 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 RBM10P98175 930 aaKnown RBP15.98■□□□□ 0.15
UPF1-206ENST00000598471 NRG1Q02297 640 aaPredicted RBP15.98■□□□□ 0.15
UPF1-206ENST00000598471 MMRN1Q13201 1228 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 KLF1Q13351 362 aaPredicted RBP15.98■□□□□ 0.15
UPF1-206ENST00000598471 LLGL1Q15334 1064 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 TEAD2Q15562 447 aa15.98■□□□□ 0.15
UPF1-206ENST00000598471 RARS2Q5T160 578 aaKnown RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms