RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 AP5Z1O43299 807 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 LAMTOR5O43504 91 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 ACSL4O60488 711 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 GYPCP04921 128 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 CALB1P05937 261 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 TPM1P09493 284 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 TFE3P19532 575 aaPredicted RBP11.52□□□□□ -0.57
LIG1-211ENST00000596457 DRD1P21728 446 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 MMP8P22894 467 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 MATKP42679 507 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 CENPCQ03188 943 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 DEUP1Q05D60 604 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 MTAPQ13126 283 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 CDO1Q16878 200 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 SPECC1LQ69YQ0 1117 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 GRAMD4Q6IC98 578 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 ACAD10Q6JQN1 1059 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 Q6ZS52 159 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 SND1Q7KZF4 910 aaKnown RBP eCLIP11.52□□□□□ -0.57
LIG1-211ENST00000596457 BEND5Q7L4P6 421 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 TMC6Q7Z403 805 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 ZNF687Q8N1G0 1237 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 ATP6V0D2Q8N8Y2 350 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 CLDN23Q96B33 292 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 IQCDQ96DY2 449 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 TMA16Q96EY4 203 aaKnown RBP11.52□□□□□ -0.57
LIG1-211ENST00000596457 CNTNAP3BQ96NU0 1288 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 TBCBQ99426 244 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 SELENOOQ9BVL4 669 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 CNTNAP3Q9BZ76 1288 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 NUCKS1Q9H1E3 243 aaKnown RBP11.52□□□□□ -0.57
LIG1-211ENST00000596457 TAS2R14Q9NYV8 317 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 STIM2Q9P246 746 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 DEC1Q9P2X7 70 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 SLC12A6Q9UHW9 1150 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 STAP1Q9ULZ2 295 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 ZFHX4Q86UP3 3567 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 ITIH6Q6UXX5 1313 aa11.52□□□□□ -0.57
LIG1-211ENST00000596457 CHD6Q8TD26 2715 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 CFAP47Q6ZTR5 3102 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 TBC1D3BA6NDS4 549 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 ANTXRLA6NF34 631 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.51□□□□□ -0.57
LIG1-211ENST00000596457 HOXC11O43248 304 aaPredicted RBP11.51□□□□□ -0.57
LIG1-211ENST00000596457 TBL1XO60907 577 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 RNF40O75150 1001 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 TULP3O75386 442 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 KAT7O95251 611 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 IGLV3-27P01718 113 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 SERPING1P05155 500 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 PLEKP08567 350 aaPredicted RBP11.51□□□□□ -0.57
LIG1-211ENST00000596457 ABCB4P21439 1286 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 SLC6A4P31645 630 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 TIE1P35590 1138 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 FLT3P36888 993 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 RPS9P46781 194 aaKnown RBP11.51□□□□□ -0.57
LIG1-211ENST00000596457 DGKGP49619 791 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 ATP11AP98196 1134 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 CSTF1Q05048 431 aaKnown RBP11.51□□□□□ -0.57
LIG1-211ENST00000596457 RING1Q06587 406 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 MESP2Q0VG99 397 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 PTP4A2Q12974 167 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 CCINQ13939 588 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 TSR1Q2NL82 804 aaKnown RBP11.51□□□□□ -0.57
LIG1-211ENST00000596457 MPPE1Q53F39 396 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 C2orf27AQ580R0 203 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 ADGRF1Q5T601 910 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 EMC10Q5UCC4 262 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 RAP1GAP2Q684P5 730 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 ZC3H14Q6PJT7 736 aaKnown RBP11.51□□□□□ -0.57
LIG1-211ENST00000596457 CHSY1Q86X52 802 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 PHF13Q86YI8 300 aaPredicted RBP11.51□□□□□ -0.57
LIG1-211ENST00000596457 C1orf210Q8IVY1 113 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 VSTM4Q8IW00 320 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 SFTPA1Q8IWL2 248 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 LGI2Q8N0V4 545 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 CPXM2Q8N436 756 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 RPLP0P6Q8NHW5 317 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 JOSD2Q8TAC2 188 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 RXFP2Q8WXD0 754 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 NKD2Q969F2 451 aaPredicted RBP11.51□□□□□ -0.57
LIG1-211ENST00000596457 SLC39A13Q96H72 371 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 CFAP57Q96MR6 1250 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 DDX50Q9BQ39 737 aaKnown RBP11.51□□□□□ -0.57
LIG1-211ENST00000596457 IER2Q9BTL4 223 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 CHRDQ9H2X0 955 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 ZDHHC4Q9NPG8 344 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.51□□□□□ -0.57
LIG1-211ENST00000596457 XPO7Q9UIA9 1087 aaKnown RBP11.51□□□□□ -0.57
LIG1-211ENST00000596457 FAM186AA6NE01 2351 aa11.51□□□□□ -0.57
LIG1-211ENST00000596457 TPRP12270 2363 aaKnown RBP11.5□□□□□ -0.57
LIG1-211ENST00000596457 K7EQS6 105 aa11.5□□□□□ -0.57
LIG1-211ENST00000596457 DDX3XO00571 662 aaKnown RBP eCLIP11.5□□□□□ -0.57
LIG1-211ENST00000596457 ATMINO43313 823 aaPredicted RBP11.5□□□□□ -0.57
LIG1-211ENST00000596457 LATS1O95835 1130 aa11.5□□□□□ -0.57
LIG1-211ENST00000596457 FTLP02792 175 aaPredicted RBP11.5□□□□□ -0.57
LIG1-211ENST00000596457 KRT3P12035 628 aa11.5□□□□□ -0.57
LIG1-211ENST00000596457 PDGFRAP16234 1089 aa11.5□□□□□ -0.57
LIG1-211ENST00000596457 TACR2P21452 398 aa11.5□□□□□ -0.57
LIG1-211ENST00000596457 CCR1P32246 355 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms