RNA–Protein interactions for RNA: ENST00000581383.1

SMCHD1-205, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 806 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-205ENST00000581383 CCDC134Q9H6E4 229 aa5.35□□□□□ -1.55
SMCHD1-205ENST00000581383 SEPSECSQ9HD40 501 aaKnown RBP5.35□□□□□ -1.55
SMCHD1-205ENST00000581383 RRN3Q9NYV6 651 aa5.35□□□□□ -1.55
SMCHD1-205ENST00000581383 ADAMTS5Q9UNA0 930 aa5.35□□□□□ -1.55
SMCHD1-205ENST00000581383 CNTN6Q9UQ52 1028 aa5.35□□□□□ -1.55
SMCHD1-205ENST00000581383 PCDHB2Q9Y5E7 798 aa5.35□□□□□ -1.55
SMCHD1-205ENST00000581383 H0Y3Z8 333 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 M0QZQ0 153 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 EIF3FO00303 357 aaPredicted RBP5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 HNRNPCP07910 306 aaKnown RBP eCLIP5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 NPSP0C0P6 89 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 ITPKBP27987 946 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 ADD2P35612 726 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 SF3A3Q12874 501 aaKnown RBP eCLIP5.34□□□□□ -1.556e-7■■■■■ 28.1
SMCHD1-205ENST00000581383 TRIM60Q495X7 471 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 ZNF569Q5MCW4 686 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 ANKRD16Q6P6B7 361 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 FAM71DQ8N9W8 422 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 OR6Y1Q8NGX8 325 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 SCARB1Q8WTV0 552 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 AFG1LQ8WV93 481 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 OVCA2Q8WZ82 227 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 FSD1LQ9BXM9 530 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 SAP30LQ9HAJ7 183 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 USP29Q9HBJ7 922 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 SNX15Q9NRS6 342 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 FBXO28Q9NVF7 368 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 SH3BP4Q9P0V3 963 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 KCND3Q9UK17 655 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 VPS4AQ9UN37 437 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 GTF2A1LQ9UNN4 478 aa5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 C19orf53Q9UNZ5 99 aaPredicted RBP5.34□□□□□ -1.55
SMCHD1-205ENST00000581383 EFCAB8A8MWE9 144 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 M0QYT0 321 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 KRT38O76015 456 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 TJP3O95049 919 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 TMIGD3P0DMS9 266 aaPredicted RBP5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 MYCLP12524 364 aaPredicted RBP5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 PEPDP12955 493 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 THBS4P35443 961 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 AARSP49588 968 aaKnown RBP eCLIP5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 COPB1P53618 953 aaKnown RBP5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 PROK1P58294 105 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 LMAN2Q12907 356 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 DNASE1L3Q13609 305 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 TAF12Q16514 161 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 ADCK5Q3MIX3 580 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 MTX3Q5HYI7 312 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 DENND2CQ68D51 928 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 ANKRD40Q6AI12 368 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 MTHFD1LQ6UB35 978 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 KIRREL2Q6UWL6 708 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 NAPRTQ6XQN6 538 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 PNPLA1Q8N8W4 532 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 GOLGA1Q92805 767 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 UBXN10Q96LJ8 280 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 ZNF778Q96MU6 729 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 MACROD1Q9BQ69 325 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 VPS45Q9NRW7 570 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 C9orf78Q9NZ63 289 aaPredicted RBP5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 FEM1BQ9UK73 627 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 NFU1Q9UMS0 254 aa5.33□□□□□ -1.56
SMCHD1-205ENST00000581383 CCDC187A0A096LP49 1063 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 LARGE1O95461 756 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 PYGLP06737 847 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 RXRAP19793 462 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 DRD4P21917 467 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 MMP8P22894 467 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 SERPINA4P29622 427 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 GPC5P78333 572 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 TXNL4AP83876 142 aaKnown RBP5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 GALNTL6Q49A17 601 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 RNASE12Q5GAN4 147 aaKnown RBP5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 FBXO47Q5MNV8 452 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 TTC22Q5TAA0 569 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 CYP26C1Q6V0L0 522 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 C2CD5Q86YS7 1000 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 SFTPA1Q8IWL2 248 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 SPPL3Q8TCT6 385 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 CPT1BQ92523 772 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 REXO5Q96IC2 774 aaKnown RBP5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 PAAF1Q9BRP4 392 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 THAP7Q9BT49 309 aaPredicted RBP5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 CINPQ9BW66 212 aaPredicted RBP5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 CIPCQ9C0C6 399 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 LIN7CQ9NUP9 197 aaKnown RBP5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 ZBTB1Q9Y2K1 713 aa5.32□□□□□ -1.56
SMCHD1-205ENST00000581383 FNDC1Q4ZHG4 1894 aaPredicted RBP5.31□□□□□ -1.56
SMCHD1-205ENST00000581383 LOC105369274A0A096LPK9 316 aa5.31□□□□□ -1.56
SMCHD1-205ENST00000581383 LOC102723532A0A0G2JNH3 316 aa5.31□□□□□ -1.56
SMCHD1-205ENST00000581383 RRN3P2A6NIE6 340 aa5.31□□□□□ -1.56
SMCHD1-205ENST00000581383 E7EVH7 732 aa5.31□□□□□ -1.56
SMCHD1-205ENST00000581383 SMIM22K7EJ46 135 aa5.31□□□□□ -1.56
SMCHD1-205ENST00000581383 EXOC3O60645 756 aa5.31□□□□□ -1.56
SMCHD1-205ENST00000581383 PRAMEF2O60811 474 aa5.31□□□□□ -1.56
SMCHD1-205ENST00000581383 CELA2AP08217 269 aa5.31□□□□□ -1.56
SMCHD1-205ENST00000581383 CKMT1AP12532 417 aa5.31□□□□□ -1.56
SMCHD1-205ENST00000581383 GALNSP34059 522 aa5.31□□□□□ -1.56
SMCHD1-205ENST00000581383 IGHMBP2P38935 993 aaKnown RBP5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms