RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 SLC5A3P53794 718 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 NOMO3P69849 1222 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 XIAPP98170 497 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 TGFBIQ15582 683 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 OGFOD2Q6N063 350 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 USP13Q92995 863 aaPredicted RBP16.78■□□□□ 0.28
LINC00554-201ENST00000564841 LRGUKQ96M69 825 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 SEMA6AQ9H2E6 1030 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 ACAD9Q9H845 621 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 APOBEC2Q9Y235 224 aaKnown RBP16.78■□□□□ 0.28
LINC00554-201ENST00000564841 NFASCO94856 1347 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 UBE4BO95155 1302 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 SH3PXD2BA1X283 911 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 SNNO75324 88 aaPredicted RBP16.78■□□□□ 0.28
LINC00554-201ENST00000564841 RGS20O76081 388 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 PGK2P07205 417 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 PTPN1P18031 435 aaKnown RBP16.78■□□□□ 0.28
LINC00554-201ENST00000564841 TCN1P20061 433 aaPredicted RBP16.78■□□□□ 0.28
LINC00554-201ENST00000564841 CTBSQ01459 385 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 TFDP3Q5H9I0 405 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 VSIG10LQ86VR7 867 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 FAM156AQ8NDB6 213 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 ADAM32Q8TC27 787 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 NKD2Q969F2 451 aaPredicted RBP16.78■□□□□ 0.28
LINC00554-201ENST00000564841 CCDC97Q96F63 343 aaPredicted RBP16.78■□□□□ 0.28
LINC00554-201ENST00000564841 PKP2Q99959 881 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 CAAP1Q9H8G2 361 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 TMEM8AQ9HCN3 771 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 TBC1D22BQ9NU19 505 aa16.78■□□□□ 0.28
LINC00554-201ENST00000564841 KANSL1LA0AUZ9 987 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 WDR64B1ANS9 1081 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 E7ESA3 106 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 CFLARO15519 480 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 KLHL41O60662 606 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 NR1H2P55055 460 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 PFKPQ01813 784 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 PDE1CQ14123 709 aaPredicted RBP16.77■□□□□ 0.28
LINC00554-201ENST00000564841 TAF5Q15542 800 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 MTERF2Q49AM1 385 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 TRMT10BQ6PF06 316 aaKnown RBP16.77■□□□□ 0.28
LINC00554-201ENST00000564841 B3GNT9Q6UX72 402 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 NPNTQ6UXI9 565 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 AHI1Q8N157 1196 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 ZNF516Q92618 1163 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 SYT17Q9BSW7 474 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 BRD8Q9H0E9 1235 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 ZNF696Q9H7X3 374 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 HOXC10Q9NYD6 342 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 FETUBQ9UGM5 382 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 PCDHB2Q9Y5E7 798 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 CNTNAP2Q9UHC6 1331 aa16.77■□□□□ 0.28
LINC00554-201ENST00000564841 C19orf81C9J6K1 198 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 STX16-NPEPL1H3BU86 382 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 FBP2O00757 339 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 ZBTB14O43829 449 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 BPGMP07738 259 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 CSH1P0DML2 217 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 CSH2P0DML3 217 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 FGFR3P22607 806 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 NDST2P52849 883 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 FASTKD1Q53R41 847 aaKnown RBP16.77■□□□□ 0.27
LINC00554-201ENST00000564841 PPM1LQ5SGD2 360 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 CYP4A22Q5TCH4 519 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 MFSD4BQ5TF39 518 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 DRICH1Q6PGQ1 229 aaPredicted RBP16.77■□□□□ 0.27
LINC00554-201ENST00000564841 ADGRF2Q8IZF7 708 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 LRRC43Q8N309 656 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 CCDC33Q8N5R6 958 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 TMEM161BQ8NDZ6 487 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 PSMD13Q9UNM6 376 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 RNF11Q9Y3C5 154 aa16.77■□□□□ 0.27
LINC00554-201ENST00000564841 HMX2A2RU54 273 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 IL1BP01584 269 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 XRCC1P18887 633 aaPredicted RBP16.76■□□□□ 0.27
LINC00554-201ENST00000564841 EPHA3P29320 983 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 GJA8P48165 433 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 IGBP1P78318 339 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 TTC39BQ5VTQ0 682 aaPredicted RBP16.76■□□□□ 0.27
LINC00554-201ENST00000564841 PDPK2PQ6A1A2 396 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 PLEKHA7Q6IQ23 1121 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 SLC26A11Q86WA9 606 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 UNC5BQ8IZJ1 945 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 TSPAN14Q8NG11 270 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 TMEM143Q96AN5 459 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 PPP1R10Q96QC0 940 aaKnown RBP16.76■□□□□ 0.27
LINC00554-201ENST00000564841 PAIP1Q9H074 479 aaKnown RBP16.76■□□□□ 0.27
LINC00554-201ENST00000564841 SPATA7Q9P0W8 599 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 PTPRJQ12913 1337 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 HTR3EA5X5Y0 456 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 ITGBL1O95965 494 aaPredicted RBP16.76■□□□□ 0.27
LINC00554-201ENST00000564841 IDH3AP50213 366 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 MS4A2Q01362 244 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 SP2Q02086 613 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 ATP1A4Q13733 1029 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 REPS2Q8NFH8 660 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 ZSCAN18Q8TBC5 510 aaPredicted RBP16.76■□□□□ 0.27
LINC00554-201ENST00000564841 JADE3Q92613 823 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 PLAC1Q9HBJ0 212 aa16.76■□□□□ 0.27
LINC00554-201ENST00000564841 BRCA1P38398 1863 aaKnown RBP16.76■□□□□ 0.27
LINC00554-201ENST00000564841 NOP56O00567 594 aaKnown RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms