RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 HPS3Q969F9 1004 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 MRGPRX2Q96LB1 330 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 CGRRF1Q99675 332 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 MIR1-1HGQ9H1L0 117 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 C12orf49Q9H741 205 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 TMEM30AQ9NV96 361 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 IL37Q9NZH6 218 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 GGT7Q9UJ14 662 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 APOBEC2Q9Y235 224 aaKnown RBP10.6□□□□□ -0.71
SCFD1-220ENST00000556486 URB1O60287 2271 aaKnown RBP10.6□□□□□ -0.71
SCFD1-220ENST00000556486 CFAP46Q8IYW2 2715 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 ASXL3Q9C0F0 2248 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 MUC22E2RYF6 1773 aaPredicted RBP10.6□□□□□ -0.71
SCFD1-220ENST00000556486 TMEM131Q92545 1883 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 FAM92AA1XBS5 289 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 ANKRD62A6NC57 917 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 TRABD2BA6NFA1 517 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 F8VP50 259 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 PYCARD-AS1I3L0S3 204 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 CUTAO60888 179 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 CBFA2T3O75081 653 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 NDUFS2O75306 463 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 MBL2P11226 248 aaPredicted RBP10.59□□□□□ -0.71
SCFD1-220ENST00000556486 PTPN1P18031 435 aaKnown RBP10.59□□□□□ -0.71
SCFD1-220ENST00000556486 ANXA13P27216 316 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 ITPKBP27987 946 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 GRIK1P39086 918 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 DPP6P42658 865 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 TUBP50607 506 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 CLDN6P56747 220 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 CYP27A1Q02318 531 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 STK38Q15208 465 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 WDR72Q3MJ13 1102 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 SPDYCQ5MJ68 293 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 SNX30Q5VWJ9 437 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 EGFLAMQ63HQ2 1017 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 TMEM214Q6NUQ4 689 aaKnown RBP10.59□□□□□ -0.71
SCFD1-220ENST00000556486 SHC4Q6S5L8 630 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 SLC36A4Q6YBV0 504 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 Q6ZVU0 165 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 UNC13DQ70J99 1090 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 DDX42Q86XP3 938 aaKnown RBP eCLIP10.59□□□□□ -0.71
SCFD1-220ENST00000556486 ZCCHC9Q8N567 271 aaKnown RBP10.59□□□□□ -0.71
SCFD1-220ENST00000556486 XXYLT1Q8NBI6 393 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 B3GALNT2Q8NCR0 500 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 PDZD8Q8NEN9 1154 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 WBP2Q969T9 261 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 OTUB2Q96DC9 234 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 MMS19Q96T76 1030 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 MRPL45Q9BRJ2 306 aaKnown RBP10.59□□□□□ -0.71
SCFD1-220ENST00000556486 PCOLCE2Q9UKZ9 415 aa10.59□□□□□ -0.71
SCFD1-220ENST00000556486 TMA7Q9Y2S6 64 aaKnown RBP10.59□□□□□ -0.71
SCFD1-220ENST00000556486 PVALEFA0A1B0GWK0 134 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 A0A1W2PQD8 194 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 A0A1W2PQF6 199 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 E2F8A0AVK6 867 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 FAM187AA6NFU0 413 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 WASH3PC4AMC7 463 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 K7ELQ4 463 aaPredicted RBP10.58□□□□□ -0.72
SCFD1-220ENST00000556486 TULP3O75386 442 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 PDGFRBP09619 1106 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 DLATP10515 647 aaKnown RBP10.58□□□□□ -0.72
SCFD1-220ENST00000556486 IRF1P10914 325 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 PLA2G2AP14555 144 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 TNNI1P19237 187 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 TNFRSF4P43489 277 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 AP3M2P53677 418 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 CACNA2D1P54289 1103 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 ASIC1P78348 528 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 TAF10Q12962 218 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 HNRNPDQ14103 355 aaKnown RBP10.58□□□□□ -0.72
SCFD1-220ENST00000556486 ANO4Q32M45 955 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 MDH1BQ5I0G3 518 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 KIAA1324Q6UXG2 1013 aaKnown RBP10.58□□□□□ -0.72
SCFD1-220ENST00000556486 RABEPKQ7Z6M1 372 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 CACUL1Q86Y37 369 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 CYP4X1Q8N118 509 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 NUP93Q8N1F7 819 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 GOLGA5Q8TBA6 731 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 RHBDD1Q8TEB9 315 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 SYAP1Q96A49 352 aaPredicted RBP10.58□□□□□ -0.72
SCFD1-220ENST00000556486 CCDC74AQ96AQ1 378 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 ZNF396Q96N95 335 aaPredicted RBP10.58□□□□□ -0.72
SCFD1-220ENST00000556486 SLITRK1Q96PX8 696 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 SNX25Q9H3E2 840 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 GAREM1Q9H706 876 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 CACNA2D2Q9NY47 1150 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 TBC1D14Q9P2M4 693 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 BTBD3Q9Y2F9 522 aa10.58□□□□□ -0.72
SCFD1-220ENST00000556486 FNDC3AQ9Y2H6 1198 aaKnown RBP10.58□□□□□ -0.72
SCFD1-220ENST00000556486 GOLGA4Q13439 2230 aaKnown RBP10.58□□□□□ -0.72
SCFD1-220ENST00000556486 MEI4A8MW99 385 aa10.57□□□□□ -0.72
SCFD1-220ENST00000556486 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.57□□□□□ -0.72
SCFD1-220ENST00000556486 RTN3O95197 1032 aaPredicted RBP10.57□□□□□ -0.72
SCFD1-220ENST00000556486 ZDHHC11BP0C7U3 371 aa10.57□□□□□ -0.72
SCFD1-220ENST00000556486 NTSR1P30989 418 aa10.57□□□□□ -0.72
SCFD1-220ENST00000556486 ABCG1P45844 678 aa10.57□□□□□ -0.72
SCFD1-220ENST00000556486 TNNC1P63316 161 aa10.57□□□□□ -0.72
SCFD1-220ENST00000556486 SLC14A1Q13336 389 aa10.57□□□□□ -0.72
SCFD1-220ENST00000556486 NNTQ13423 1086 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms