RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 KIAA1257Q9ULG3 409 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 NENFQ9UMX5 172 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 TFR2Q9UP52 801 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 USP3Q9Y6I4 520 aa13□□□□□ -0.33
SHMT2-214ENST00000554604 A0A087X0T9 212 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-214ENST00000554604 XPO1O14980 1071 aaKnown RBP12.99□□□□□ -0.33
SHMT2-214ENST00000554604 MDM4O15151 490 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 PAEPP09466 180 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 CCDC172P0C7W6 258 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 FAM228BP0C875 321 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 H2AFXP16104 143 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-214ENST00000554604 PRLRP16471 622 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 SOX5P35711 763 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 PLA2G4AP47712 749 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 SLC6A11P48066 632 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 PXNP49023 591 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-214ENST00000554604 TKTL1P51854 596 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 KDSRQ06136 332 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 PDE4CQ08493 712 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 BST2Q10589 180 aaKnown RBP12.99□□□□□ -0.33
SHMT2-214ENST00000554604 GAB4Q2WGN9 574 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 PREPLQ4J6C6 727 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-214ENST00000554604 HTR3DQ70Z44 454 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 SYT13Q7L8C5 426 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 SCD5Q86SK9 330 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 VPS36Q86VN1 386 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 WDR5BQ86VZ2 330 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 TTC30AQ86WT1 665 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 MIB1Q86YT6 1006 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 CAMKK1Q8N5S9 505 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 GPR161Q8N6U8 529 aaKnown RBP12.99□□□□□ -0.33
SHMT2-214ENST00000554604 EZH1Q92800 747 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-214ENST00000554604 ALS2CR12Q96Q35 445 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 HHIPQ96QV1 700 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 LRRC4Q9HBW1 653 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 ARHGEF4Q9NR80 690 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 SPHK2Q9NRA0 654 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 CLIC5Q9NZA1 410 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 DNAJC12Q9UKB3 198 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 JRKLQ9Y4A0 524 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 SAR1BQ9Y6B6 198 aa12.99□□□□□ -0.33
SHMT2-214ENST00000554604 ABCA7Q8IZY2 2146 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 THADAQ6YHU6 1953 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 MACROD2A1Z1Q3 448 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 F8VZ95 297 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 K7EQS6 105 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 HRO43593 1189 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 KAT7O95251 611 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 ZBED1O96006 694 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 ATP1A1P05023 1023 aaKnown RBP12.98□□□□□ -0.33
SHMT2-214ENST00000554604 SETSIPP0DME0 302 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 GRIA2P42262 883 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 COG7P83436 770 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 PTK2Q05397 1052 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 CKAP4Q07065 602 aaKnown RBP12.98□□□□□ -0.33
SHMT2-214ENST00000554604 EFEMP1Q12805 493 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 SRSF5Q13243 272 aaKnown RBP12.98□□□□□ -0.33
SHMT2-214ENST00000554604 DMC1Q14565 340 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 RAB41Q5JT25 222 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 LAIR1Q6GTX8 287 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 NUDT18Q6ZVK8 323 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 ZNF571Q7Z3V5 609 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-214ENST00000554604 TMEM25Q86YD3 366 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 SIX6OS1Q8N1H7 587 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 ZNF276Q8N554 614 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 UBR7Q8N806 425 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 NAT16Q8N8M0 369 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 UBA3Q8TBC4 463 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 USP33Q8TEY7 942 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 WBP2Q969T9 261 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 NOX5Q96PH1 765 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 POLR3BQ9NW08 1133 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-214ENST00000554604 DEC1Q9P2X7 70 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 RASAL2Q9UJF2 1139 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 INTUQ9ULD6 942 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 STRIP2Q9ULQ0 834 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 DUSP10Q9Y6W6 482 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 GON4LQ3T8J9 2241 aa12.98□□□□□ -0.33
SHMT2-214ENST00000554604 CCDC163A0A0D9SF12 145 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 TBC1D3BA6NDS4 549 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 TULP2O00295 520 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 O00370 1275 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 HOXC11O43248 304 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-214ENST00000554604 RPP40O75818 363 aaKnown RBP12.97□□□□□ -0.33
SHMT2-214ENST00000554604 APBB3O95704 486 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 HOXC13P31276 330 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 YWHAGP61981 247 aaKnown RBP eCLIP12.97□□□□□ -0.33
SHMT2-214ENST00000554604 MRPS21P82921 87 aaKnown RBP12.97□□□□□ -0.33
SHMT2-214ENST00000554604 GCNT1Q02742 428 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 ARID5AQ03989 594 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 ADIGQ0VDE8 80 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 DRAP1Q14919 205 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-214ENST00000554604 STILQ15468 1287 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 GJB7Q6PEY0 223 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 LCLAT1Q6UWP7 414 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 TPGS1Q6ZTW0 290 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 C12orf40Q86WS4 652 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 ARHGEF19Q8IW93 802 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 CCDC33Q8N5R6 958 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms