RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 SEPT6Q14141 434 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 CTTNQ14247 550 aaKnown RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 CCNG2Q16589 344 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 TRIM71Q2Q1W2 868 aaKnown RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 ZNF829Q3KNS6 432 aaPredicted RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 MMEL1Q495T6 779 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 HERC4Q5GLZ8 1057 aaPredicted RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 TRAF7Q6Q0C0 670 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 USP17L6PQ6QN14 398 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 OLFML1Q6UWY5 402 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 FAM47EQ6ZV65 393 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 DPP9Q86TI2 863 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 NLRX1Q86UT6 975 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 TICAM1Q8IUC6 712 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 LRRC49Q8IUZ0 686 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 CPXCR1Q8N123 301 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 ICA1LQ8NDH6 482 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 ZNF420Q8TAQ5 688 aaPredicted RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 HM13Q8TCT9 377 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 PSPC1Q8WXF1 523 aaKnown RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 RELTQ969Z4 430 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 NACC2Q96BF6 587 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 MTBPQ96DY7 904 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 PCYT2Q99447 389 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 EIF2AK1Q9BQI3 630 aaKnown RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 SLC2A11Q9BYW1 496 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 HEY2Q9UBP5 337 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 ANAPC5Q9UJX4 755 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 VPS28Q9UK41 221 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 PTBP2Q9UKA9 531 aaKnown RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 ITGA11Q9UKX5 1188 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 WASF2Q9Y6W5 498 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 NLRC5Q86WI3 1866 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 ZBTB42B2RXF5 422 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 AREL1O15033 823 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 PRMT3O60678 531 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 MYBL1P10243 752 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 HMOX2P30519 316 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 CPT1AP50416 773 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 ATP6V0D1P61421 351 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 TARBP2Q15633 366 aaKnown RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 UBE2SQ16763 222 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 KLHL38Q2WGJ6 581 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 NADK2Q4G0N4 442 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 ARHGEF16Q5VV41 709 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 PLBD1Q6P4A8 553 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 TRIM67Q6ZTA4 783 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 LZTR1Q8N653 840 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 CASP10Q92851 521 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 DHRS1Q96LJ7 313 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 NIFKQ9BYG3 293 aaKnown RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 MANSC1Q9H8J5 431 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 PFDN4Q9NQP4 134 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 KCNH7Q9NS40 1196 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 TMEM260Q9NX78 707 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 EPS15L1Q9UBC2 864 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 SOX13Q9UN79 622 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 SNX9Q9Y5X1 595 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 GPC6Q9Y625 555 aaPredicted RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 IGKV6-21A0A0C4DH24 114 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 EIF4E1BA6NMX2 242 aaKnown RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 FAM25EA8MYX2 175 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 ALOX15BO15296 676 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 MSH4O15457 936 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 SGTAO43765 313 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 BMP10O95393 424 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 ACSL3O95573 720 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 SERPINA6P08185 405 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 BTF3P20290 206 aaKnown RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 CYP2B6P20813 491 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 AMPD1P23109 780 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 SFNP31947 248 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 ITGA8P53708 1063 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 ARID5AQ03989 594 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 SLC18A2Q05940 514 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 TMEM62Q0P6H9 643 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 COX10Q12887 443 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 SERINC3Q13530 473 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 IL31Q6EBC2 164 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 PPP1R2P3Q6NXS1 205 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 LRRC8BQ6P9F7 803 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 ADGRD1Q6QNK2 874 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 POTEHQ6S545 545 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 TMC7Q7Z402 723 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 CYP2U1Q7Z449 544 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 ZDHHC14Q8IZN3 488 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 KCT2Q8NC54 265 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 ZFP28Q8NHY6 868 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 SLC35C1Q96A29 364 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 NMD3Q96D46 503 aaKnown RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 TRMT2BQ96GJ1 504 aaKnown RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 DYDC2Q96IM9 177 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 DOK1Q99704 481 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 PSD2Q9BQI7 771 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 TSSK1BQ9BXA7 367 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 FRMD8P1Q9BZ68 369 aaPredicted RBP5.43□□□□□ -1.54
USP28-213ENST00000544967 PLEKHA5Q9HAU0 1116 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 CNTN3Q9P232 1028 aa5.43□□□□□ -1.54
USP28-213ENST00000544967 SLC7A8Q9UHI5 535 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms