RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 USP18Q9UMW8 372 aa17.76■□□□□ 0.43
SPIDR-227ENST00000541342 CHMP2BQ9UQN3 213 aa17.76■□□□□ 0.43
SPIDR-227ENST00000541342 EFR3BQ9Y2G0 817 aa17.76■□□□□ 0.43
SPIDR-227ENST00000541342 MAP3K13O43283 966 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 THP07101 528 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 SLC6A3Q01959 620 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 PTK7Q13308 1070 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 DSC3Q14574 896 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 ACAP1Q15027 740 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 HADHQ16836 314 aaKnown RBP17.75■□□□□ 0.43
SPIDR-227ENST00000541342 CCDC14Q49A88 953 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 FAM71DQ8N9W8 422 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 PAAF1Q9BRP4 392 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 CNPY3Q9BT09 278 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 TSSK1BQ9BXA7 367 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 MIS12Q9H081 205 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 ASNSD1Q9NWL6 643 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 GSC2O15499 205 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 RPLP2P05387 115 aaKnown RBP17.75■□□□□ 0.43
SPIDR-227ENST00000541342 ACAT1P24752 427 aaKnown RBP17.75■□□□□ 0.43
SPIDR-227ENST00000541342 GCKP35557 465 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 BST2Q10589 180 aaKnown RBP17.75■□□□□ 0.43
SPIDR-227ENST00000541342 ACSBG2Q5FVE4 666 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 KIAA0319Q5VV43 1072 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 RNF180Q86T96 592 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 TEX9Q8N6V9 391 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 TMEM120AQ9BXJ8 343 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 SLC38A7Q9NVC3 462 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 NMRK1Q9NWW6 199 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 FRMPD3Q5JV73 1810 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 TCRBV9S1A1TA0A576 114 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 DNAJC6O75061 913 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 C1QAP02745 245 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 BCAT1P54687 386 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 RINLQ6ZS11 566 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 B3GALNT2Q8NCR0 500 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 RAET1EQ8TD07 263 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 FAM136AQ96C01 138 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 ARHGEF4Q9NR80 690 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 GIT1Q9Y2X7 761 aa17.75■□□□□ 0.43
SPIDR-227ENST00000541342 TDRD15B5MCY1 1934 aaKnown RBP17.75■□□□□ 0.43
SPIDR-227ENST00000541342 NDC80O14777 642 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 CCDC22O60826 627 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 RNF8O76064 485 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 HAUS5O94927 633 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 PDHA1P08559 390 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 ACADSP16219 412 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 PCK1P35558 622 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 RPL34P49207 117 aaKnown RBP17.74■□□□□ 0.43
SPIDR-227ENST00000541342 CDO1Q16878 200 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 FAM111AQ96PZ2 611 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 TRIM55Q9BYV6 548 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 GABRDO14764 452 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 HNRNPCL1O60812 293 aaKnown RBP17.74■□□□□ 0.43
SPIDR-227ENST00000541342 HOXD10P28358 340 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 ELK3P41970 407 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 KBTBD12Q3ZCT8 623 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 SYCP2LQ5T4T6 812 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 CHSY1Q86X52 802 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 PALM2Q8IXS6 379 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 HACE1Q8IYU2 909 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 CMASQ8NFW8 434 aaPredicted RBP17.74■□□□□ 0.43
SPIDR-227ENST00000541342 WDR60Q8WVS4 1066 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 HSPH1Q92598 858 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 ALKBH8Q96BT7 664 aaKnown RBP17.74■□□□□ 0.43
SPIDR-227ENST00000541342 ZNF333Q96JL9 665 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 LBHD1Q9BQE6 289 aaPredicted RBP17.74■□□□□ 0.43
SPIDR-227ENST00000541342 LPXNO60711 386 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 BGNP21810 368 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 CDK16Q00536 496 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 SLC18A2Q05940 514 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 FAAP100Q0VG06 881 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 KPNB1Q14974 876 aaKnown RBP17.74■□□□□ 0.43
SPIDR-227ENST00000541342 HSF5Q4G112 596 aaPredicted RBP17.74■□□□□ 0.43
SPIDR-227ENST00000541342 FAM26DQ5JW98 314 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 CDHR3Q6ZTQ4 885 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 RSAD2Q8WXG1 361 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 DNAJC9Q8WXX5 260 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 SENP8Q96LD8 212 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 SYT15Q9BQS2 421 aa17.74■□□□□ 0.43
SPIDR-227ENST00000541342 CASTOR2A6NHX0 329 aa17.73■□□□□ 0.43
SPIDR-227ENST00000541342 CLDN5O00501 218 aa17.73■□□□□ 0.43
SPIDR-227ENST00000541342 KRT36O76013 467 aa17.73■□□□□ 0.43
SPIDR-227ENST00000541342 CES4AQ5XG92 561 aa17.73■□□□□ 0.43
SPIDR-227ENST00000541342 RNF169Q8NCN4 708 aa17.73■□□□□ 0.43
SPIDR-227ENST00000541342 ZNF483Q8TF39 744 aaPredicted RBP17.73■□□□□ 0.43
SPIDR-227ENST00000541342 SLC44A1Q8WWI5 657 aa17.73■□□□□ 0.43
SPIDR-227ENST00000541342 APOPT1Q96IL0 206 aa17.73■□□□□ 0.43
SPIDR-227ENST00000541342 TNIP3Q96KP6 325 aa17.73■□□□□ 0.43
SPIDR-227ENST00000541342 TAS2R1Q9NYW7 299 aa17.73■□□□□ 0.43
SPIDR-227ENST00000541342 NOD1Q9Y239 953 aa17.73■□□□□ 0.43
SPIDR-227ENST00000541342 DPYSL4O14531 572 aa17.73■□□□□ 0.43
SPIDR-227ENST00000541342 ZNF623O75123 536 aa17.73■□□□□ 0.43
SPIDR-227ENST00000541342 ARFIP2P53365 341 aa17.73■□□□□ 0.43
SPIDR-227ENST00000541342 SESN3P58005 492 aa17.73■□□□□ 0.43
SPIDR-227ENST00000541342 DPYSL3Q14195 570 aa17.73■□□□□ 0.43
SPIDR-227ENST00000541342 SEPT7Q16181 437 aaKnown RBP17.73■□□□□ 0.43
SPIDR-227ENST00000541342 LHX8Q68G74 356 aa17.73■□□□□ 0.43
SPIDR-227ENST00000541342 PAQR9Q6ZVX9 377 aa17.73■□□□□ 0.43
SPIDR-227ENST00000541342 PDIK1LQ8N165 341 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms