RNA–Protein interactions for RNA: ENST00000540963.1

CHFR-218, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 875 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-218ENST00000540963 NUMA1Q14980 2115 aa28.06■■■□□ 2.08
CHFR-218ENST00000540963 A0A1B0GVT2 93 aa28.06■■■□□ 2.08
CHFR-218ENST00000540963 SLFN14P0C7P3 912 aa28.06■■■□□ 2.08
CHFR-218ENST00000540963 PDIA4P13667 645 aaKnown RBP28.06■■■□□ 2.08
CHFR-218ENST00000540963 GRIA4P48058 902 aa28.06■■■□□ 2.08
CHFR-218ENST00000540963 CEP135Q66GS9 1140 aa28.06■■■□□ 2.08
CHFR-218ENST00000540963 TMEM215Q68D42 235 aa28.06■■■□□ 2.08
CHFR-218ENST00000540963 ENGASEQ8NFI3 743 aa28.06■■■□□ 2.08
CHFR-218ENST00000540963 DDI1Q8WTU0 396 aa28.06■■■□□ 2.08
CHFR-218ENST00000540963 HNRNPLLQ8WVV9 542 aaKnown RBP28.06■■■□□ 2.08
CHFR-218ENST00000540963 APOBEC3GQ9HC16 384 aaKnown RBP28.06■■■□□ 2.08
CHFR-218ENST00000540963 TRAF3IP3Q9Y228 551 aa28.06■■■□□ 2.08
CHFR-218ENST00000540963 ZBTB32Q9Y2Y4 487 aaPredicted RBP28.06■■■□□ 2.08
CHFR-218ENST00000540963 SMG1Q96Q15 3661 aaKnown RBP28.05■■■□□ 2.08
CHFR-218ENST00000540963 E9PAM4 449 aa28.05■■■□□ 2.08
CHFR-218ENST00000540963 TNFSF14O43557 240 aa28.05■■■□□ 2.08
CHFR-218ENST00000540963 PCDHGA12O60330 932 aa28.05■■■□□ 2.08
CHFR-218ENST00000540963 KIF20AO95235 890 aa28.05■■■□□ 2.08
CHFR-218ENST00000540963 HMBSP08397 361 aa28.05■■■□□ 2.08
CHFR-218ENST00000540963 CSNK1EP49674 416 aaKnown RBP28.05■■■□□ 2.08
CHFR-218ENST00000540963 ZBTB16Q05516 673 aa28.05■■■□□ 2.08
CHFR-218ENST00000540963 MPPE1Q53F39 396 aa28.05■■■□□ 2.08
CHFR-218ENST00000540963 INTS8Q75QN2 995 aaKnown RBP28.05■■■□□ 2.08
CHFR-218ENST00000540963 CCDC150Q8NCX0 1101 aa28.05■■■□□ 2.08
CHFR-218ENST00000540963 WFIKKN2Q8TEU8 576 aa28.05■■■□□ 2.08
CHFR-218ENST00000540963 IGSF8Q969P0 613 aa28.05■■■□□ 2.08
CHFR-218ENST00000540963 LHX5Q9H2C1 402 aa28.05■■■□□ 2.08
CHFR-218ENST00000540963 TMEM245Q9H330 911 aa28.05■■■□□ 2.08
CHFR-218ENST00000540963 CLEC4EQ9ULY5 219 aa28.05■■■□□ 2.08
CHFR-218ENST00000540963 CALUO43852 315 aaPredicted RBP28.04■■■□□ 2.08
CHFR-218ENST00000540963 GRK6P43250 576 aa28.04■■■□□ 2.08
CHFR-218ENST00000540963 NFIL3Q16649 462 aa28.04■■■□□ 2.08
CHFR-218ENST00000540963 KIF19Q2TAC6 998 aa28.04■■■□□ 2.08
CHFR-218ENST00000540963 KMT5BQ4FZB7 885 aa28.04■■■□□ 2.08
CHFR-218ENST00000540963 RAB41Q5JT25 222 aa28.04■■■□□ 2.08
CHFR-218ENST00000540963 RSRC2Q7L4I2 434 aaKnown RBP28.04■■■□□ 2.08
CHFR-218ENST00000540963 SCUBE3Q8IX30 993 aa28.04■■■□□ 2.08
CHFR-218ENST00000540963 SORCS1Q8WY21 1168 aa28.04■■■□□ 2.08
CHFR-218ENST00000540963 PCDHA7Q9UN72 937 aa28.04■■■□□ 2.08
CHFR-218ENST00000540963 A0A087WV48 116 aa28.03■■■□□ 2.08
CHFR-218ENST00000540963 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP28.03■■■□□ 2.08
CHFR-218ENST00000540963 MYL1P05976 194 aa28.03■■■□□ 2.08
CHFR-218ENST00000540963 CD58P19256 250 aa28.03■■■□□ 2.08
CHFR-218ENST00000540963 ME1P48163 572 aa28.03■■■□□ 2.08
CHFR-218ENST00000540963 CAMK2BQ13554 666 aa28.03■■■□□ 2.08
CHFR-218ENST00000540963 TRIP4Q15650 581 aaPredicted RBP28.03■■■□□ 2.08
CHFR-218ENST00000540963 PTPRNQ16849 979 aa28.03■■■□□ 2.08
CHFR-218ENST00000540963 ATL3Q6DD88 541 aa28.03■■■□□ 2.08
CHFR-218ENST00000540963 FAM124AQ86V42 546 aa28.03■■■□□ 2.08
CHFR-218ENST00000540963 TAS1R2Q8TE23 839 aa28.03■■■□□ 2.08
CHFR-218ENST00000540963 C6orf106Q9H6K1 298 aaPredicted RBP28.03■■■□□ 2.08
CHFR-218ENST00000540963 OLA1Q9NTK5 396 aaKnown RBP28.03■■■□□ 2.08
CHFR-218ENST00000540963 PLA2G4CQ9UP65 541 aa28.03■■■□□ 2.08
CHFR-218ENST00000540963 ANKRD6Q9Y2G4 727 aa28.03■■■□□ 2.08
CHFR-218ENST00000540963 SNX11Q9Y5W9 270 aa28.03■■■□□ 2.08
CHFR-218ENST00000540963 MUC22E2RYF6 1773 aaPredicted RBP28.03■■■□□ 2.08
CHFR-218ENST00000540963 SLC12A8A0AV02 714 aa28.02■■■□□ 2.08
CHFR-218ENST00000540963 TRABD2BA6NFA1 517 aa28.02■■■□□ 2.08
CHFR-218ENST00000540963 PAPSS1O43252 624 aaPredicted RBP28.02■■■□□ 2.08
CHFR-218ENST00000540963 DFNA5O60443 496 aa28.02■■■□□ 2.08
CHFR-218ENST00000540963 ACSL1P33121 698 aa28.02■■■□□ 2.08
CHFR-218ENST00000540963 YWHAGP61981 247 aaKnown RBP eCLIP28.02■■■□□ 2.08
CHFR-218ENST00000540963 SMAD1Q15797 465 aaKnown RBP28.02■■■□□ 2.08
CHFR-218ENST00000540963 PM20D1Q6GTS8 502 aa28.02■■■□□ 2.08
CHFR-218ENST00000540963 GRAMD1CQ8IYS0 662 aa28.02■■■□□ 2.08
CHFR-218ENST00000540963 PDCD7Q8N8D1 485 aaKnown RBP28.02■■■□□ 2.08
CHFR-218ENST00000540963 SNX19Q92543 992 aa28.02■■■□□ 2.08
CHFR-218ENST00000540963 BTBD1Q9H0C5 482 aa28.02■■■□□ 2.08
CHFR-218ENST00000540963 TM9SF3Q9HD45 589 aa28.02■■■□□ 2.08
CHFR-218ENST00000540963 STOML2Q9UJZ1 356 aa28.02■■■□□ 2.08
CHFR-218ENST00000540963 BTBD3Q9Y2F9 522 aa28.02■■■□□ 2.08
CHFR-218ENST00000540963 KNTC1P50748 2209 aa28.02■■■□□ 2.08
CHFR-218ENST00000540963 HOXD9P28356 352 aaPredicted RBP28.01■■■□□ 2.07
CHFR-218ENST00000540963 CCT8P50990 548 aa28.01■■■□□ 2.07
CHFR-218ENST00000540963 SLC8A3P57103 927 aa28.01■■■□□ 2.07
CHFR-218ENST00000540963 INAVAQ3KP66 663 aa28.01■■■□□ 2.07
CHFR-218ENST00000540963 CACUL1Q86Y37 369 aa28.01■■■□□ 2.07
CHFR-218ENST00000540963 PAGE5Q96GU1 130 aa28.01■■■□□ 2.07
CHFR-218ENST00000540963 LRIG1Q96JA1 1093 aa28.01■■■□□ 2.07
CHFR-218ENST00000540963 HEXIM2Q96MH2 286 aaKnown RBP28.01■■■□□ 2.07
CHFR-218ENST00000540963 SERTAD1Q9UHV2 236 aa28.01■■■□□ 2.07
CHFR-218ENST00000540963 WDR3Q9UNX4 943 aaKnown RBP eCLIP28.01■■■□□ 2.07
CHFR-218ENST00000540963 GCN1Q92616 2671 aaKnown RBP28■■■□□ 2.07
CHFR-218ENST00000540963 COL5A1P20908 1838 aaPredicted RBP28■■■□□ 2.07
CHFR-218ENST00000540963 ACTN4O43707 911 aaKnown RBP28■■■□□ 2.07
CHFR-218ENST00000540963 TSPAN3O60637 253 aa28■■■□□ 2.07
CHFR-218ENST00000540963 SEMA4FO95754 770 aa28■■■□□ 2.07
CHFR-218ENST00000540963 LATS1O95835 1130 aa28■■■□□ 2.07
CHFR-218ENST00000540963 CD27P26842 260 aa28■■■□□ 2.07
CHFR-218ENST00000540963 HLA-FP30511 346 aa28■■■□□ 2.07
CHFR-218ENST00000540963 GCLMP48507 274 aa28■■■□□ 2.07
CHFR-218ENST00000540963 HARS2P49590 506 aaKnown RBP28■■■□□ 2.07
CHFR-218ENST00000540963 PPP3CAQ08209 521 aa28■■■□□ 2.07
CHFR-218ENST00000540963 CYP4F3Q08477 520 aa28■■■□□ 2.07
CHFR-218ENST00000540963 ARHGAP17Q68EM7 881 aa28■■■□□ 2.07
CHFR-218ENST00000540963 KIAA0907Q7Z7F0 614 aaPredicted RBP28■■■□□ 2.07
CHFR-218ENST00000540963 PIGZQ86VD9 579 aa28■■■□□ 2.07
CHFR-218ENST00000540963 DDX51Q8N8A6 666 aaKnown RBP eCLIP28■■■□□ 2.07
CHFR-218ENST00000540963 GOLGA1Q92805 767 aa28■■■□□ 2.07
CHFR-218ENST00000540963 BIRC7Q96CA5 298 aa28■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms