RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 DUSP1P28562 367 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 HOXA7P31268 230 aaPredicted RBP2.74□□□□□ -1.97
CD44-216ENST00000525293 IDUAP35475 653 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 COPB2P35606 906 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 PRIM2P49643 509 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 TBX4P57082 545 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 GAB1Q13480 694 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 MTX1Q13505 466 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 CNGA3Q16281 694 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 LEXMQ3ZCV2 418 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 HSP90AB2PQ58FF8 381 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 TMEM196Q5HYL7 178 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 C1QTNF12Q5T7M4 302 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 RAP1GAP2Q684P5 730 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 ZNF517Q6ZMY9 492 aaPredicted RBP2.74□□□□□ -1.97
CD44-216ENST00000525293 PIM3Q86V86 326 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 ARFGAP1Q8N6T3 406 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 RNF152Q8N8N0 203 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 C1orf131Q8NDD1 294 aaKnown RBP2.74□□□□□ -1.97
CD44-216ENST00000525293 WIPF2Q8TF74 440 aaPredicted RBP2.74□□□□□ -1.97
CD44-216ENST00000525293 NSMCE1Q8WV22 266 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 PIGKQ92643 395 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 TRIM44Q96DX7 344 aaPredicted RBP2.74□□□□□ -1.97
CD44-216ENST00000525293 ZFYVE19Q96K21 471 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 NEUROD6Q96NK8 337 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 WDR24Q96S15 920 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 RPS6KC1Q96S38 1066 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 TBCBQ99426 244 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 TRMOQ9BU70 441 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 MAGEB5Q9BZ81 275 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 EBF3Q9H4W6 596 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 STK26Q9P289 416 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 ZMYND8Q9ULU4 1186 aaPredicted RBP2.74□□□□□ -1.97
CD44-216ENST00000525293 ZSCAN21Q9Y5A6 473 aaPredicted RBP2.74□□□□□ -1.97
CD44-216ENST00000525293 SIRT4Q9Y6E7 314 aaPredicted RBP2.74□□□□□ -1.97
CD44-216ENST00000525293 SQORQ9Y6N5 450 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 SLC22A23A1A5C7 686 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 CD8B2A6NJW9 211 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 CLCA1A8K7I4 914 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 TTC34A8MYJ7 566 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 HMGB1P1B2RPK0 211 aaPredicted RBP2.73□□□□□ -1.97
CD44-216ENST00000525293 PRYO14603 147 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 APOL1O14791 398 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 KCNQ3O43525 872 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 CRYABP02511 175 aaKnown RBP2.73□□□□□ -1.97
CD44-216ENST00000525293 PSG1P11464 419 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 MYL4P12829 197 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 ST6GAL1P15907 406 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 TSHRP16473 764 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 RPS6KB1P23443 525 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 IGHMBP2P38935 993 aaKnown RBP2.73□□□□□ -1.97
CD44-216ENST00000525293 STT3AP46977 705 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 CASP5P51878 434 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 TERF1P54274 439 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 SRSF1Q07955 248 aaKnown RBP eCLIP2.73□□□□□ -1.97
CD44-216ENST00000525293 SEMA3BQ13214 749 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 ELF2Q15723 593 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 COBLL1Q53SF7 1204 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 HSP90AB3PQ58FF7 597 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 FAM90A2PQ658T7 463 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 MRNIPQ6NTE8 343 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 ZNF793Q6ZN11 406 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 RBM44Q6ZP01 1051 aaKnown RBP2.73□□□□□ -1.97
CD44-216ENST00000525293 COLCA1Q6ZS62 124 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 KIAA0408Q6ZU52 694 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 BEND5Q7L4P6 421 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 SKAP1Q86WV1 359 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 NBPF5PQ86XG9 351 aaPredicted RBP2.73□□□□□ -1.97
CD44-216ENST00000525293 ZDHHC17Q8IUH5 632 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 CCDC28AQ8IWP9 274 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 SAMD14Q8IZD0 417 aaPredicted RBP2.73□□□□□ -1.97
CD44-216ENST00000525293 RSPH1Q8WYR4 309 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 AKAP1Q92667 903 aaKnown RBP eCLIP2.73□□□□□ -1.97
CD44-216ENST00000525293 CELF1Q92879 486 aaKnown RBP2.73□□□□□ -1.97
CD44-216ENST00000525293 GRAMD1AQ96CP6 724 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 MYCBPQ99417 103 aaPredicted RBP2.73□□□□□ -1.97
CD44-216ENST00000525293 PCDHAC1Q9H158 963 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 TMEM45AQ9NWC5 275 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 ASNSD1Q9NWL6 643 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 MYO1AQ9UBC5 1043 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 TTC3P53804 2025 aa2.73□□□□□ -1.97
CD44-216ENST00000525293 CCDC187A0A096LP49 1063 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 FAM90A10PA6NDY2 464 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 USP12O75317 370 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 TULP3O75386 442 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 NDST3O95803 873 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 SLC3A2P08195 630 aaKnown RBP2.72□□□□□ -1.97
CD44-216ENST00000525293 FAM200BP0CF97 657 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 ALADP13716 330 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 SLC5A1P13866 664 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 IDEP14735 1019 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 MMP8P22894 467 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 RRM1P23921 792 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 MST1P26927 711 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 TKTP29401 623 aaKnown RBP2.72□□□□□ -1.97
CD44-216ENST00000525293 HOXD12P35452 270 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 GSTM5P46439 218 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 BIRC2Q13490 618 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 SAFBQ15424 915 aaKnown RBP eCLIP2.72□□□□□ -1.97
CD44-216ENST00000525293 P3H1Q32P28 736 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms