RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), human

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-215	ENST00000525241	PRY	O14603	147 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	NKX2-8	O15522	239 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	TCEA3	O75764	348 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	ACTL6B	O94805	426 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	TUBB4A	P04350	444 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	VEGFA	P15692	232 aa	Predicted RBP	4.98	□□□□□ -1.61
CD44-215	ENST00000525241	THBS4	P35443	961 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	AGTR2	P50052	363 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	POLE2	P56282	527 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	CNGA3	Q16281	694 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	AAK1	Q2M2I8	961 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	BTBD16	Q32M84	506 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	GRAMD1B	Q3KR37	738 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	SULT6B1	Q6IMI4	303 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	ZNF575	Q86XF7	245 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	SLC44A2	Q8IWA5	706 aa	Predicted RBP	4.98	□□□□□ -1.61
CD44-215	ENST00000525241	SCAMP5	Q8TAC9	235 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	AKAP1	Q92667	903 aa	Known RBP eCLIP	4.98	□□□□□ -1.61
CD44-215	ENST00000525241	TRMT61A	Q96FX7	289 aa	Known RBP	4.98	□□□□□ -1.61
CD44-215	ENST00000525241	RTKN	Q9BST9	563 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	MECR	Q9BV79	373 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	GATA5	Q9BWX5	397 aa	Predicted RBP	4.98	□□□□□ -1.61
CD44-215	ENST00000525241	PABPC3	Q9H361	631 aa	Known RBP	4.98	□□□□□ -1.61
CD44-215	ENST00000525241	MLXIP	Q9HAP2	919 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	AGO4	Q9HCK5	861 aa	Known RBP	4.98	□□□□□ -1.61
CD44-215	ENST00000525241	PRDM8	Q9NQV8	689 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	NFU1	Q9UMS0	254 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	ZBTB1	Q9Y2K1	713 aa		4.98	□□□□□ -1.61
CD44-215	ENST00000525241	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-215	ENST00000525241	PPP6C	O00743	305 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	PPP6R2	O75170	966 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	CELA2A	P08217	269 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	CERS1	P27544	350 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	NDUFS1	P28331	727 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	MPG	P29372	298 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	HOXD12	P35452	270 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	CBFB	Q13951	182 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	KPNB1	Q14974	876 aa	Known RBP	4.97	□□□□□ -1.61
CD44-215	ENST00000525241	PDCD2	Q16342	344 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-215	ENST00000525241	PFKFB3	Q16875	520 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-215	ENST00000525241	CC2D1B	Q5T0F9	858 aa	Known RBP	4.97	□□□□□ -1.61
CD44-215	ENST00000525241	ATPAF1	Q5TC12	328 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-215	ENST00000525241	JMJD6	Q6NYC1	403 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-215	ENST00000525241	KLHL17	Q6TDP4	642 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	LAS2	Q8IYD9	372 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	GALNT16	Q8N428	558 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	MYCT1	Q8N699	235 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	OTUD7A	Q8TE49	926 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-215	ENST00000525241	P2RY11	Q96G91	374 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	FAR2	Q96K12	515 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	SH2D3A	Q9BRG2	576 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	SORBS1	Q9BX66	1292 aa	Known RBP	4.97	□□□□□ -1.61
CD44-215	ENST00000525241	QTRT1	Q9BXR0	403 aa	Known RBP	4.97	□□□□□ -1.61
CD44-215	ENST00000525241	SEMA4C	Q9C0C4	833 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	NUAK2	Q9H093	628 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	VPS16	Q9H269	839 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	PDGFC	Q9NRA1	345 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	DAPP1	Q9UN19	280 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	HEMK1	Q9Y5R4	338 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-215	ENST00000525241	SIRT4	Q9Y6E7	314 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-215	ENST00000525241	WDR17	Q8IZU2	1322 aa		4.97	□□□□□ -1.61
CD44-215	ENST00000525241	hCG_1642624	A0A1W2PR95	340 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	TTC34	A8MYJ7	566 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	IPO5	O00410	1097 aa	Known RBP	4.96	□□□□□ -1.62
CD44-215	ENST00000525241	RRH	O14718	337 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	NBN	O60934	754 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	KAT7	O95251	611 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	IDUA	P35475	653 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	STAT6	P42226	847 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	VPS41	P49754	854 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	ZNF84	P51523	738 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	FOXL2	P58012	376 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	FAM3B	P58499	235 aa	Predicted RBP	4.96	□□□□□ -1.62
CD44-215	ENST00000525241	RPL15	P61313	204 aa	Known RBP	4.96	□□□□□ -1.62
CD44-215	ENST00000525241	AP2B1	P63010	937 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	SRSF4	Q08170	494 aa	Known RBP	4.96	□□□□□ -1.62
CD44-215	ENST00000525241	CCDC142	Q17RM4	750 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	MEX3C	Q5U5Q3	659 aa	Known RBP	4.96	□□□□□ -1.62
CD44-215	ENST00000525241	ANKRD40	Q6AI12	368 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	NFRKB	Q6P4R8	1299 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	TFAP2D	Q7Z6R9	452 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	SRRM1	Q8IYB3	904 aa	Known RBP	4.96	□□□□□ -1.62
CD44-215	ENST00000525241	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	4.96	□□□□□ -1.62
CD44-215	ENST00000525241	ASB12	Q8WXK4	309 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	MAP4K1	Q92918	833 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	REXO5	Q96IC2	774 aa	Known RBP	4.96	□□□□□ -1.62
CD44-215	ENST00000525241	ZNF845	Q96IR2	970 aa	Predicted RBP	4.96	□□□□□ -1.62
CD44-215	ENST00000525241	DDX23	Q9BUQ8	820 aa	Known RBP	4.96	□□□□□ -1.62
CD44-215	ENST00000525241	CCDC134	Q9H6E4	229 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	ASNSD1	Q9NWL6	643 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	MAFF	Q9ULX9	164 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	B3GNT3	Q9Y2A9	372 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	RIPOR2	Q9Y4F9	1068 aa		4.96	□□□□□ -1.62
CD44-215	ENST00000525241	SLC38A8	A6NNN8	435 aa		4.95	□□□□□ -1.62
CD44-215	ENST00000525241	OVOL3	O00110	214 aa		4.95	□□□□□ -1.62
CD44-215	ENST00000525241	LARGE1	O95461	756 aa		4.95	□□□□□ -1.62
CD44-215	ENST00000525241	SLC3A2	P08195	630 aa	Known RBP	4.95	□□□□□ -1.62
CD44-215	ENST00000525241	CYP3A4	P08684	503 aa		4.95	□□□□□ -1.62
CD44-215	ENST00000525241	PEPD	P12955	493 aa		4.95	□□□□□ -1.62
CD44-215	ENST00000525241	EPHB2	P29323	1055 aa		4.95	□□□□□ -1.62

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