RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 ACOX1Q15067 660 aa16.67■□□□□ 0.26
PCDHA3-201ENST00000522353 NYAP1Q6ZVC0 841 aa16.67■□□□□ 0.26
PCDHA3-201ENST00000522353 PRPF39Q86UA1 669 aaKnown RBP16.67■□□□□ 0.26
PCDHA3-201ENST00000522353 P3H2Q8IVL5 708 aa16.67■□□□□ 0.26
PCDHA3-201ENST00000522353 SLC35C1Q96A29 364 aa16.67■□□□□ 0.26
PCDHA3-201ENST00000522353 PANX3Q96QZ0 392 aa16.67■□□□□ 0.26
PCDHA3-201ENST00000522353 LOC100653049A0A140TA62 436 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 KRT34O76011 436 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 GSNP06396 782 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 YBX3P16989 372 aaKnown RBP eCLIP16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 PTPN1P18031 435 aaKnown RBP16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 CHKAP35790 457 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 CHI3L1P36222 383 aaPredicted RBP16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 CD151P48509 253 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 CDH8P55286 799 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 SLC45A4Q5BKX6 768 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 PRAMEF19Q5SWL8 479 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 ARMC12Q5T9G4 340 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 CDKAL1Q5VV42 579 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 FBXL19Q6PCT2 694 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 LAYNQ6UX15 382 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 SLC22A9Q8IVM8 553 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 ZNF614Q8N883 585 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 TRPM4Q8TD43 1214 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 COPS5Q92905 334 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 ZBTB45Q96K62 511 aaPredicted RBP16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 UBIAD1Q9Y5Z9 338 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 ARHGEF9O43307 516 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 MTA2O94776 668 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 NUMBP49757 651 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 SCUBE3Q8IX30 993 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 PACSIN1Q9BY11 444 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 ULBP1Q9BZM6 244 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 UBP1Q9NZI7 540 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 TRPC1P48995 793 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 USP41Q3LFD5 358 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 REXO1L1PQ8IX06 675 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 SYTL1Q8IYJ3 562 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 HTR3CQ8WXA8 447 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 CCT8L1PA6NM43 557 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 TRIP10Q15642 601 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 CERS5Q8N5B7 392 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 OSGEPQ9NPF4 335 aa16.66■□□□□ 0.26
PCDHA3-201ENST00000522353 GLTPD2A6NH11 291 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 HACD1B0YJ81 288 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 O00370 1275 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 IFNA14P01570 189 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 NPY2RP49146 381 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 CENPAP49450 140 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 AVENQ9NQS1 362 aaPredicted RBP16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 ZBTB39O15060 712 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 MAFO75444 373 aaPredicted RBP16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 HOXB8P17481 243 aaPredicted RBP16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 RPL9P32969 192 aaKnown RBP16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 CRYBB1P53674 252 aaPredicted RBP16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 POU6F1Q14863 301 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 MCOLN3Q8TDD5 553 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 GFM2Q969S9 779 aaKnown RBP16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 ZCWPW1Q9H0M4 648 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 CDH9Q9ULB4 789 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 ZNF839A8K0R7 811 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 CCND1P24385 295 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 FLT3LGP49771 235 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 CCDC85BQ15834 202 aaPredicted RBP16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 FAM110CQ1W6H9 321 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 KIAA0319LQ8IZA0 1049 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 FAM136AQ96C01 138 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 FAM153AQ9UHL3 310 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 CYTH3O43739 400 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 KRT8P05787 483 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 PCNAP12004 261 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 GRK2P25098 689 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 NOS2P35228 1153 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 MAPK8P45983 427 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 GLRBP48167 497 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 IRAK1P51617 712 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 NEK2P51955 445 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 CSHL1Q14406 222 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 CAPRIN2Q6IMN6 1127 aaKnown RBP16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 NECAB2Q7Z6G3 386 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 RGL4Q8IZJ4 473 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 ZNF513Q8N8E2 541 aaPredicted RBP16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 SH3GL1Q99961 368 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 MIEF1Q9NQG6 463 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 MPP6Q9NZW5 540 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 SHOC2Q9UQ13 582 aa16.65■□□□□ 0.26
PCDHA3-201ENST00000522353 DEAF1O75398 565 aaPredicted RBP16.64■□□□□ 0.25
PCDHA3-201ENST00000522353 USP17L7P0C7H9 530 aa16.64■□□□□ 0.25
PCDHA3-201ENST00000522353 IMPDH2P12268 514 aa16.64■□□□□ 0.25
PCDHA3-201ENST00000522353 HDCP19113 662 aa16.64■□□□□ 0.25
PCDHA3-201ENST00000522353 COPAP53621 1224 aa16.64■□□□□ 0.25
PCDHA3-201ENST00000522353 GALNTL6Q49A17 601 aa16.64■□□□□ 0.25
PCDHA3-201ENST00000522353 DAB2IPQ5VWQ8 1189 aa16.64■□□□□ 0.25
PCDHA3-201ENST00000522353 SRLQ86TD4 932 aa16.64■□□□□ 0.25
PCDHA3-201ENST00000522353 CASKIN2Q8WXE0 1202 aa16.64■□□□□ 0.25
PCDHA3-201ENST00000522353 C18orf25Q96B23 403 aaPredicted RBP16.64■□□□□ 0.25
PCDHA3-201ENST00000522353 HSFY1Q96LI6 401 aa16.64■□□□□ 0.25
PCDHA3-201ENST00000522353 SLC24A2Q9UI40 661 aa16.64■□□□□ 0.25
PCDHA3-201ENST00000522353 TMEM114B3SHH9 223 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms