RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 SPIRE1Q08AE8 756 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 DGKZQ13574 1117 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 KIZQ2M2Z5 673 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 BICRALQ6AI39 1079 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 C11orf74Q86VG3 221 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 ZBTB8BQ8NAP8 495 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 TSEN34Q9BSV6 310 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 BDH2Q9BUT1 245 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 TRIM54Q9BYV2 358 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 SENP2Q9HC62 589 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 SLC9A3P48764 834 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 BST2Q10589 180 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 TBCELQ5QJ74 424 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 GLB1LQ6UWU2 654 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 EXOC3L1Q86VI1 746 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 SLC13A5Q86YT5 568 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 TPCN2Q8NHX9 752 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 CENPIQ92674 756 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 ACSF2Q96CM8 615 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 ERGIC2Q96RQ1 377 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 SRPK1Q96SB4 655 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 YME1L1Q96TA2 773 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 DGCR6LQ9BY27 220 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 EHD4Q9H223 541 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 SP110Q9HB58 689 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 ARHGEF38Q9NXL2 777 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 VPS4AQ9UN37 437 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 PCDHB7Q9Y5E2 793 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 C3orf70A6NLC5 250 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 PTGES3LE9PB15 166 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 EXTL3O43909 919 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 TLR2O60603 784 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 SPRP35270 261 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 PSMC5P62195 406 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 SPDYE7PQ495Y7 208 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 PDCD4Q53EL6 469 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 IL31Q6EBC2 164 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 PLEKHH3Q7Z736 793 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 CACTIN-AS1Q8N1I8 211 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 DPP10Q8N608 796 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 FAM71DQ8N9W8 422 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 PNPT1Q8TCS8 783 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 GSDMCQ9BYG8 508 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 THAP2Q9H0W7 228 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 NAGPAQ9UK23 515 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 ZSCAN5CA6NGD5 496 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 PDLIM1O00151 329 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 CCRL2O00421 344 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 SLC16A3O15427 465 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 SIN3BO75182 1162 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 USP12O75317 370 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 ENTPD3O75355 529 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 PSMG1O95456 288 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 ZNF12P17014 697 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 SERPINB5P36952 375 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 SLC16A1P53985 500 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 FKBP1BP68106 108 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 POLD3Q15054 466 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 PDK3Q15120 406 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 UGP2Q16851 508 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 NDUFAF6Q330K2 333 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 SYTL3Q4VX76 610 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 KLHDC7AQ5VTJ3 777 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 PPP1R18Q6NYC8 613 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 EFL1Q7Z2Z2 1120 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 PM20D2Q8IYS1 436 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 ELMO2Q96JJ3 720 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 SMAD5Q99717 465 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 THUMPD3Q9BV44 507 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 OSBPL11Q9BXB4 747 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 STARD7Q9NQZ5 370 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 TMEM39AQ9NV64 488 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 CMTM6Q9NX76 183 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 CACNA1FO60840 1977 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 NCAPD2Q15021 1401 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 SF3B1O75533 1304 aaKnown RBP eCLIP8.94□□□□□ -0.981e-8■■■■■ 160.4
LIMCH1-218ENST00000513024 EPHB2P29323 1055 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 RCVRNP35243 200 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 PTDSS1P48651 473 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 ACLYP53396 1101 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 FAXCQ5TGI0 409 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 TTC39BQ5VTQ0 682 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 CES5AQ6NT32 575 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 PLET1Q6UQ28 207 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 KRT78Q8N1N4 520 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 TMEM199Q8N511 208 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 SLC25A41Q8N5S1 370 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 ATG16L2Q8NAA4 619 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 ASIC4Q96FT7 647 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 ILKAPQ9H0C8 392 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 RIC8BQ9NVN3 520 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 RGS17Q9UGC6 210 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 POLG2Q9UHN1 485 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 SYNPO2Q9UMS6 1093 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 MINPP1Q9UNW1 487 aa8.94□□□□□ -0.98
LIMCH1-218ENST00000513024 RFX7Q2KHR2 1363 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 SH3D21A4FU49 640 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 TMCC2O75069 709 aa8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 CD44P16070 742 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-218ENST00000513024 GNASQ5JWF2 1037 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms