RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 TPMTP51580 245 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 CBWD6Q4V339 395 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 CBWD3Q5JTY5 395 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 CBWD5Q5RIA9 395 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 DCAF12L1Q5VU92 463 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 TCERG1LQ5VWI1 586 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 TMEM215Q68D42 235 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 TMPRSS6Q8IU80 811 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 FMNL3Q8IVF7 1028 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 NAXDQ8IW45 347 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 FBXL13Q8NEE6 735 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 EDEM1Q92611 657 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 FOXJ1Q92949 421 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 SIPA1Q96FS4 1042 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 PIWIL1Q96J94 861 aaKnown RBP13.23□□□□□ -0.29
SKA1-205ENST00000494518 FAM124BQ9H5Z6 455 aaPredicted RBP13.23□□□□□ -0.29
SKA1-205ENST00000494518 IL21RQ9HBE5 538 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 RAB20Q9NX57 234 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 ELOVL2Q9NXB9 296 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 USP36Q9P275 1121 aaKnown RBP13.23□□□□□ -0.29
SKA1-205ENST00000494518 SUSD2Q9UGT4 822 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 SFMBT1Q9UHJ3 866 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 MSRB2Q9Y3D2 182 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 PCDHB9Q9Y5E1 797 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 FAM237AA0A1B0GTK4 181 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 TMEM8BA6NDV4 472 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 PIK3R2O00459 728 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 MSI1O43347 362 aaKnown RBP13.22□□□□□ -0.29
SKA1-205ENST00000494518 GJB3O75712 270 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 ZBED1O96006 694 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 EPB41P11171 864 aaKnown RBP13.22□□□□□ -0.29
SKA1-205ENST00000494518 CD19P15391 556 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 GTF2H1P32780 548 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 COPAP53621 1224 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 ARID5AQ03989 594 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 PDE4CQ08493 712 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 ADIGQ0VDE8 80 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 LRMPQ12912 555 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 PNOCQ13519 176 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 TRIP6Q15654 476 aaKnown RBP13.22□□□□□ -0.29
SKA1-205ENST00000494518 RAB41Q5JT25 222 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 ARHGAP17Q68EM7 881 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 SERPINA13PQ6UXR4 307 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 BHLHA9Q7RTU4 235 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 ARHGAP18Q8N392 663 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 ZNF276Q8N554 614 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 ANKRD52Q8NB46 1076 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 UBA3Q8TBC4 463 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 CYB5D2Q8WUJ1 264 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 SNX19Q92543 992 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 PRCCQ92733 491 aaPredicted RBP13.22□□□□□ -0.29
SKA1-205ENST00000494518 ITM2CQ9NQX7 267 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 TSPAN16Q9UKR8 245 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 SLCO1B1Q9Y6L6 691 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 PLXNA2O75051 1894 aa13.22□□□□□ -0.29
SKA1-205ENST00000494518 NYNRINQ9P2P1 1898 aaKnown RBP13.21□□□□□ -0.29
SKA1-205ENST00000494518 A0A1B0GTW7 788 aa13.21□□□□□ -0.29
SKA1-205ENST00000494518 CETN3O15182 167 aa13.21□□□□□ -0.29
SKA1-205ENST00000494518 ZNF202O95125 648 aa13.21□□□□□ -0.29
SKA1-205ENST00000494518 FTH1P19P0C7X4 201 aa13.21□□□□□ -0.29
SKA1-205ENST00000494518 ACADMP11310 421 aa13.21□□□□□ -0.29
SKA1-205ENST00000494518 HOXD9P28356 352 aaPredicted RBP13.21□□□□□ -0.29
SKA1-205ENST00000494518 SGSHP51688 502 aa13.21□□□□□ -0.29
SKA1-205ENST00000494518 SLC8A3P57103 927 aa13.21□□□□□ -0.29
SKA1-205ENST00000494518 ENPP2Q13822 863 aa13.21□□□□□ -0.29
SKA1-205ENST00000494518 FNDC3BQ53EP0 1204 aaKnown RBP13.21□□□□□ -0.29
SKA1-205ENST00000494518 CPXM2Q8N436 756 aa13.21□□□□□ -0.29
SKA1-205ENST00000494518 SETD7Q8WTS6 366 aaKnown RBP13.21□□□□□ -0.29
SKA1-205ENST00000494518 ERCC4Q92889 916 aaPredicted RBP13.21□□□□□ -0.29
SKA1-205ENST00000494518 PLD4Q96BZ4 506 aa13.21□□□□□ -0.29
SKA1-205ENST00000494518 LRRC4Q9HBW1 653 aa13.21□□□□□ -0.29
SKA1-205ENST00000494518 EIF2B4Q9UI10 523 aaKnown RBP13.21□□□□□ -0.29
SKA1-205ENST00000494518 ADAMTS20P59510 1910 aa13.21□□□□□ -0.3
SKA1-205ENST00000494518 YJEFN3A6XGL0 299 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 E7ENQ6 273 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 XPO1O14980 1071 aaKnown RBP13.2□□□□□ -0.3
SKA1-205ENST00000494518 CALCAP01258 141 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 C7P10643 843 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 LCP1P13796 627 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 HLA-FP30511 346 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 RDXP35241 583 aaKnown RBP13.2□□□□□ -0.3
SKA1-205ENST00000494518 RGS7P49802 495 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 BCAT1P54687 386 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 BNC1Q01954 994 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 ENPEPQ07075 957 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 CUL2Q13617 745 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 ZNF423Q2M1K9 1284 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 EDRF1Q3B7T1 1238 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 SGO2Q562F6 1265 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 LAYNQ6UX15 382 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 CHST9Q7L1S5 443 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 RAB44Q7Z6P3 723 aaPredicted RBP13.2□□□□□ -0.3
SKA1-205ENST00000494518 METTL3Q86U44 580 aaKnown RBP13.2□□□□□ -0.3
SKA1-205ENST00000494518 SIX6OS1Q8N1H7 587 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 TTC39CQ8N584 583 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 RBBP8NLQ8NC74 664 aaPredicted RBP13.2□□□□□ -0.3
SKA1-205ENST00000494518 RNF139Q8WU17 664 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 DNASE2BQ8WZ79 361 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 IPO9Q96P70 1041 aaKnown RBP13.2□□□□□ -0.3
SKA1-205ENST00000494518 C6orf106Q9H6K1 298 aaPredicted RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms