RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 EBF1Q9UH73 591 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 FAM32AQ9Y421 112 aaKnown RBP6.42□□□□□ -1.38
VPS13D-209ENST00000487188 FARP1Q9Y4F1 1045 aaPredicted RBP6.42□□□□□ -1.38
VPS13D-209ENST00000487188 NFASCO94856 1347 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 MYPNQ86TC9 1320 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 AKAP10O43572 662 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 HLA-DRAP01903 254 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 DSG3P32926 999 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 NOMO3P69849 1222 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 TEX44Q53QW1 395 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 SPOPLQ6IQ16 392 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 DCDC5Q6ZRR9 648 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 ZBTB49Q6ZSB9 765 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 OTOP1Q7RTM1 612 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 KIAA2013Q8IYS2 634 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 ABRAQ8N0Z2 381 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 PHTF2Q8N3S3 785 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 UBR7Q8N806 425 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 TMEM35BQ8NCS4 154 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 ARHGEF1Q92888 912 aaKnown RBP6.42□□□□□ -1.38
VPS13D-209ENST00000487188 TAMM41Q96BW9 452 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 RCN3Q96D15 328 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 FRMD8P1Q9BZ68 369 aaPredicted RBP6.42□□□□□ -1.38
VPS13D-209ENST00000487188 TUT1Q9H6E5 874 aaKnown RBP6.42□□□□□ -1.38
VPS13D-209ENST00000487188 PALMDQ9NP74 551 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 KMT5AQ9NQR1 393 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 DNAJC28Q9NX36 388 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 ZNHIT2Q9UHR6 403 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 CROTQ9UKG9 612 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 SLC8A2Q9UPR5 921 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 RNF103-CHMP3A0A140T963 221 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 KCNN4O15554 427 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 KRT75O95678 551 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 BCL10O95999 233 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 TYK2P29597 1187 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 CDKN2BP42772 138 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 PTK2BQ14289 1009 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 NEDD8Q15843 81 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 ZNF394Q53GI3 561 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 TEDDM1Q5T9Z0 273 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 TMEM214Q6NUQ4 689 aaKnown RBP6.42□□□□□ -1.38
VPS13D-209ENST00000487188 IGDCC3Q8IVU1 814 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 CYGBQ8WWM9 190 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 HPS1Q92902 700 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 PBXIP1Q96AQ6 731 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 LENG9Q96B70 501 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 NRBF2Q96F24 287 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 VCPIP1Q96JH7 1222 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 RNPEPQ9H4A4 650 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 DHX33Q9H6R0 707 aaKnown RBP6.42□□□□□ -1.38
VPS13D-209ENST00000487188 WDR41Q9HAD4 459 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 CYP26B1Q9NR63 512 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 PAK5Q9P286 719 aa6.42□□□□□ -1.38
VPS13D-209ENST00000487188 NAV1Q8NEY1 1877 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 LOC102724428A0A0B4J2F2 783 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 A0A1B0GTW7 788 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 A0A1W2PPW3 197 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 SAC3D1A6NKF1 404 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 KPNA7A9QM74 516 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.41□□□□□ -1.38
VPS13D-209ENST00000487188 CD48P09326 243 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 PIK3R1P27986 724 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 PRDX6P30041 224 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 POLR2BP30876 1174 aaKnown RBP6.41□□□□□ -1.38
VPS13D-209ENST00000487188 CRHR1P34998 444 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 GABRB2P47870 512 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 LIG4P49917 911 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 KPNA1P52294 538 aaPredicted RBP6.41□□□□□ -1.38
VPS13D-209ENST00000487188 TPD52P55327 224 aaPredicted RBP6.41□□□□□ -1.38
VPS13D-209ENST00000487188 SIK1P57059 783 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 ARPC4P59998 168 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 ABCE1P61221 599 aaKnown RBP6.41□□□□□ -1.38
VPS13D-209ENST00000487188 BNIP3Q12983 259 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 DPYSQ14117 519 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 TGFBIQ15582 683 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 ZBED5Q49AG3 693 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 DCAF6Q58WW2 860 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 PERM1Q5SV97 790 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 CYP4A22Q5TCH4 519 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 LRRC38Q5VT99 294 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 LRRC8EQ6NSJ5 796 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 DSELQ8IZU8 1212 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 GPD1LQ8N335 351 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 SLC35B2Q8TB61 432 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 PGBD4Q96DM1 585 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 ZNF512Q96ME7 567 aaPredicted RBP6.41□□□□□ -1.38
VPS13D-209ENST00000487188 LENG8Q96PV6 779 aaPredicted RBP6.41□□□□□ -1.38
VPS13D-209ENST00000487188 KIFC3Q9BVG8 833 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 HIPK3Q9H422 1215 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 COQ10BQ9H8M1 238 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 POLR1BQ9H9Y6 1135 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 CXorf21Q9HAI6 301 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 WARS2Q9UGM6 360 aaKnown RBP6.41□□□□□ -1.38
VPS13D-209ENST00000487188 GNPTGQ9UJJ9 305 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 ZNRF3Q9ULT6 936 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 MYH14Q7Z406 1995 aaKnown RBP6.41□□□□□ -1.38
VPS13D-209ENST00000487188 CXorf49A8MYA2 514 aaPredicted RBP6.41□□□□□ -1.38
VPS13D-209ENST00000487188 E7ESA3 106 aa6.41□□□□□ -1.38
VPS13D-209ENST00000487188 TOP3BO95985 862 aaKnown RBP6.41□□□□□ -1.38
VPS13D-209ENST00000487188 IREB2P48200 963 aaKnown RBP6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms