RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 TIPINQ9BVW5 301 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 CXCL16Q9H2A7 254 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 C17orf75Q9HAS0 396 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 POLD4Q9HCU8 107 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 PTPRHQ9HD43 1115 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 TOPORSQ9NS56 1045 aaPredicted RBP7.92□□□□□ -1.14
USP54-208ENST00000461520 ARHGAP28Q9P2N2 729 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 CACNG4Q9UBN1 327 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 KCNG1Q9UIX4 513 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 FBXW11Q9UKB1 542 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 GDAQ9Y2T3 454 aa7.92□□□□□ -1.14
USP54-208ENST00000461520 ZFP37Q9Y6Q3 630 aaPredicted RBP7.92□□□□□ -1.14
USP54-208ENST00000461520 SMIM28A0A1B0GU29 152 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 MROH6A6NGR9 719 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 PP2D1A8MPX8 630 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 TRAPPC3O43617 180 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 HIP1RO75146 1068 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 B3GAT3O94766 335 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 ADRB1P08588 477 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 POU2F2P09086 479 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 MYBP10242 640 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 LAMP2P13473 410 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 AOC1P19801 751 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 CDC25AP30304 524 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 NBL1P41271 181 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 CLCNKBP51801 687 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 ATP2C1P98194 919 aaPredicted RBP7.91□□□□□ -1.14
USP54-208ENST00000461520 IL17AQ16552 155 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 UPP1Q16831 310 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 SPATS1Q496A3 300 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 XKR4Q5GH76 650 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 GLRA4Q5JXX5 417 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 PPM1LQ5SGD2 360 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 HYIQ5T013 277 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 LIN9Q5TKA1 542 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 ARL6IP4Q66PJ3 421 aaKnown RBP7.91□□□□□ -1.14
USP54-208ENST00000461520 DCLRE1AQ6PJP8 1040 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 ALKAL1Q6UXT8 129 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 C1orf186Q6ZWK4 172 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 RTL10Q7L3V2 364 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 DAW1Q8N136 415 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 MYADMQ96S97 322 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 KCNJ15Q99712 375 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 ACO2Q99798 780 aaKnown RBP7.91□□□□□ -1.14
USP54-208ENST00000461520 RTP3Q9BQQ7 232 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 NTPCRQ9BSD7 190 aaKnown RBP7.91□□□□□ -1.14
USP54-208ENST00000461520 MMTAG2Q9BU76 263 aaKnown RBP7.91□□□□□ -1.14
USP54-208ENST00000461520 CCDC94Q9BW85 323 aaPredicted RBP7.91□□□□□ -1.14
USP54-208ENST00000461520 MRPL4Q9BYD3 311 aaKnown RBP7.91□□□□□ -1.14
USP54-208ENST00000461520 TRIM55Q9BYV6 548 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 CDT1Q9H211 546 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 SLC6A20Q9NP91 592 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 KMT5AQ9NQR1 393 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 SLC38A7Q9NVC3 462 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 KCND2Q9NZV8 630 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 MTRRQ9UBK8 725 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 ASH2LQ9UBL3 628 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 WNT16Q9UBV4 365 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 INVSQ9Y283 1065 aa7.91□□□□□ -1.14
USP54-208ENST00000461520 VPS13AQ96RL7 3174 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 C2orf16Q68DN1 1984 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 ANHXE9PGG2 379 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 KRIT1O00522 736 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 MCF2P10911 925 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 COL6A2P12110 1019 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 KCNE1P15382 129 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 ZNF28P17035 718 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 PROZP22891 400 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 GJB2P29033 226 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 OR1D2P34982 312 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 MCM2P49736 904 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 MLLT6P55198 1093 aaPredicted RBP7.9□□□□□ -1.14
USP54-208ENST00000461520 GRIN1Q05586 938 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 MAPK7Q13164 816 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 ZNF568Q3ZCX4 644 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 CD300LGQ6UXG3 332 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 RSPO2Q6UXX9 243 aaPredicted RBP7.9□□□□□ -1.14
USP54-208ENST00000461520 GET4Q7L5D6 327 aaPredicted RBP7.9□□□□□ -1.14
USP54-208ENST00000461520 KCNK18Q7Z418 384 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 GGNQ86UU5 652 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 SLC44A3Q8N4M1 653 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 SYT2Q8N9I0 419 aaPredicted RBP7.9□□□□□ -1.14
USP54-208ENST00000461520 ST13P5Q8NFI4 369 aaPredicted RBP7.9□□□□□ -1.14
USP54-208ENST00000461520 PHOSPHO1Q8TCT1 267 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 NKD2Q969F2 451 aaPredicted RBP7.9□□□□□ -1.14
USP54-208ENST00000461520 TMX3Q96JJ7 454 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 CLIC6Q96NY7 704 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 ACAP3Q96P50 834 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 TCHPQ9BT92 498 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 TARS2Q9BW92 718 aaKnown RBP7.9□□□□□ -1.14
USP54-208ENST00000461520 UPF2Q9HAU5 1272 aaKnown RBP7.9□□□□□ -1.14
USP54-208ENST00000461520 CROTQ9UKG9 612 aa7.9□□□□□ -1.14
USP54-208ENST00000461520 CACNA1AO00555 2505 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 DCHS1Q96JQ0 3298 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 VWA3AA6NCI4 1184 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 H0YCG3 227 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 H3BQV1 296 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 SLC16A4O15374 487 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 ADAM12O43184 909 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 SLC26A4O43511 780 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms