RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 PCDHGB5Q9Y5G0 923 aa12.2□□□□□ -0.46
SYNE2-207ENST00000458046 TRPM7Q96QT4 1865 aa12.2□□□□□ -0.46
SYNE2-207ENST00000458046 RRN3P2A6NIE6 340 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 ATP2A1O14983 1001 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 PRPF4O43172 522 aaKnown RBP eCLIP12.19□□□□□ -0.46
SYNE2-207ENST00000458046 HOXC11O43248 304 aaPredicted RBP12.19□□□□□ -0.46
SYNE2-207ENST00000458046 KPNA6O60684 536 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 CCNB1P14635 433 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 PTPRAP18433 802 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 HIRAP54198 1017 aaPredicted RBP12.19□□□□□ -0.46
SYNE2-207ENST00000458046 OTUD4Q01804 1114 aaKnown RBP12.19□□□□□ -0.46
SYNE2-207ENST00000458046 ORC1Q13415 861 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 ACVR2BQ13705 512 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 STXBP2Q15833 593 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 HIF1AQ16665 826 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 CTU1Q7Z7A3 348 aaKnown RBP12.19□□□□□ -0.46
SYNE2-207ENST00000458046 CDR2LQ86X02 465 aaPredicted RBP12.19□□□□□ -0.46
SYNE2-207ENST00000458046 TMEM130Q8N3G9 435 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 JOSD2Q8TAC2 188 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 ACTL9Q8TC94 416 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 UTP4Q969X6 686 aaKnown RBP12.19□□□□□ -0.46
SYNE2-207ENST00000458046 EAF1Q96JC9 268 aaPredicted RBP12.19□□□□□ -0.46
SYNE2-207ENST00000458046 TTPALQ9BTX7 342 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 UBN1Q9NPG3 1134 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 MTRRQ9UBK8 725 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 NXF1Q9UBU9 619 aaKnown RBP12.19□□□□□ -0.46
SYNE2-207ENST00000458046 MAGEB2O15479 319 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 ADCY3O60266 1144 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 CST8O60676 142 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 CD48P09326 243 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 CD19P15391 556 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 CCND1P24385 295 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 PSMA2P25787 234 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 IL1R2P27930 398 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 LACTBP83111 547 aaPredicted RBP12.19□□□□□ -0.46
SYNE2-207ENST00000458046 RNASELQ05823 741 aaKnown RBP12.19□□□□□ -0.46
SYNE2-207ENST00000458046 TRPC3Q13507 836 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 PIGHQ14442 188 aaPredicted RBP12.19□□□□□ -0.46
SYNE2-207ENST00000458046 LRRC38Q5VT99 294 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 DPY19L2Q6NUT2 758 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 DENND1BQ6P3S1 775 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 C3orf62Q6ZUJ4 267 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 TDRPQ86YL5 185 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 SCYL3Q8IZE3 742 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 EMC1Q8N766 993 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 PYROXD1Q8WU10 500 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 TMEM165Q9HC07 324 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 SUFUQ9UMX1 484 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 C15orf41Q9Y2V0 281 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 MTF2Q9Y483 593 aaPredicted RBP12.19□□□□□ -0.46
SYNE2-207ENST00000458046 USH1CQ9Y6N9 552 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 PCNTO95613 3336 aa12.19□□□□□ -0.46
SYNE2-207ENST00000458046 TCRBV7S3A2A0A539 114 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 E2F8A0AVK6 867 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 TYROBPO43914 113 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 EDF1O60869 148 aaKnown RBP12.18□□□□□ -0.46
SYNE2-207ENST00000458046 STAM2O75886 525 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 ITGBL1O95965 494 aaPredicted RBP12.18□□□□□ -0.46
SYNE2-207ENST00000458046 ITGAVP06756 1048 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 ATP11AP98196 1134 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 NAA25Q14CX7 972 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 PDK4Q16654 411 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 CCDC142Q17RM4 750 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 RHPN2Q8IUC4 686 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 COLGALT2Q8IYK4 626 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 CCDC116Q8IYX3 515 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 KIAA0319LQ8IZA0 1049 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 ARFGAP1Q8N6T3 406 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 NKD2Q969F2 451 aaPredicted RBP12.18□□□□□ -0.46
SYNE2-207ENST00000458046 DMRTB1Q96MA1 342 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 ASB2Q96Q27 587 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 PCYT2Q99447 389 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 PCDH9Q9HC56 1237 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 NOP53Q9NZM5 478 aaKnown RBP12.18□□□□□ -0.46
SYNE2-207ENST00000458046 PSMC3IPQ9P2W1 217 aaPredicted RBP12.18□□□□□ -0.46
SYNE2-207ENST00000458046 RABGEF1Q9UJ41 708 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 SMG5Q9UPR3 1016 aaKnown RBP12.18□□□□□ -0.46
SYNE2-207ENST00000458046 CLUHO75153 1309 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 CASP8AP2Q9UKL3 1982 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 KRBA1A5PL33 1030 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 MARK3P27448 753 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 CDC25CP30307 473 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 RAP1GAPP47736 663 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 AP2B1P63010 937 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 GBE1Q04446 702 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 PRKG1Q13976 671 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 DUOXA2Q1HG44 320 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 LIN54Q6MZP7 749 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 PPP1R2P3Q6NXS1 205 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 MICALL2Q8IY33 904 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 THNSL1Q8IYQ7 743 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 SLC7A5P1Q8MH63 180 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 ANKK1Q8NFD2 765 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 SLC35B2Q8TB61 432 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 CPT1BQ92523 772 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 TNIP3Q96KP6 325 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 TXLNGQ9NUQ3 528 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 CYTH4Q9UIA0 394 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 POLIQ9UNA4 740 aa12.18□□□□□ -0.46
SYNE2-207ENST00000458046 KIAA1217Q5T5P2 1943 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms