RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 SLC22A17Q8WUG5 538 aa4.58□□□□□ -1.68
USP40-209ENST00000452724 RSC1A1Q92681 617 aa4.58□□□□□ -1.68
USP40-209ENST00000452724 KAZALD1Q96I82 304 aa4.58□□□□□ -1.68
USP40-209ENST00000452724 PSMD1Q99460 953 aa4.58□□□□□ -1.68
USP40-209ENST00000452724 PAAF1Q9BRP4 392 aa4.58□□□□□ -1.68
USP40-209ENST00000452724 ADGRE3Q9BY15 652 aa4.58□□□□□ -1.68
USP40-209ENST00000452724 MAGEH1Q9H213 219 aa4.58□□□□□ -1.68
USP40-209ENST00000452724 HERC5Q9UII4 1024 aaKnown RBP4.58□□□□□ -1.68
USP40-209ENST00000452724 VPS4AQ9UN37 437 aa4.58□□□□□ -1.68
USP40-209ENST00000452724 UBE2J1Q9Y385 318 aaPredicted RBP4.58□□□□□ -1.68
USP40-209ENST00000452724 ARHGEF17Q96PE2 2063 aaPredicted RBP4.57□□□□□ -1.68
USP40-209ENST00000452724 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.57□□□□□ -1.68
USP40-209ENST00000452724 TISP43B9A030 160 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 PRRT4C9JH25 899 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 TPD52L2O43399 206 aaKnown RBP4.57□□□□□ -1.68
USP40-209ENST00000452724 NBNO60934 754 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 RPP40O75818 363 aaKnown RBP4.57□□□□□ -1.68
USP40-209ENST00000452724 ACTL6BO94805 426 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 GYS1P13807 737 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 ATF7P17544 494 aaPredicted RBP4.57□□□□□ -1.68
USP40-209ENST00000452724 MATN1P21941 496 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 WDR5P61964 334 aaKnown RBP4.57□□□□□ -1.68
USP40-209ENST00000452724 FOXO1Q12778 655 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 AWAT1Q58HT5 328 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 ATPAF1Q5TC12 328 aaPredicted RBP4.57□□□□□ -1.68
USP40-209ENST00000452724 SLC18B1Q6NT16 456 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 ACSM6Q6P461 480 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 KLHL17Q6TDP4 642 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 TRABD2AQ86V40 505 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 ZNF366Q8N895 744 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 OR52L2PQ8NGH6 319 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 MCRS1Q96EZ8 462 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 HIC2Q96JB3 615 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 FCRL4Q96PJ5 515 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 ASB2Q96Q27 587 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 RTKNQ9BST9 563 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 ABHD10Q9NUJ1 306 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 NFU1Q9UMS0 254 aa4.57□□□□□ -1.68
USP40-209ENST00000452724 TMEM232C9JQI7 657 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 DUSP1P28562 367 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 MPGP29372 298 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 GRK6P43250 576 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 PLCD1P51178 756 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 CBFBQ13951 182 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 BTBD16Q32M84 506 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 ANO1Q5XXA6 986 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 SULT6B1Q6IMI4 303 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 C11orf87Q6NUJ2 197 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 C16orf89Q6UX73 402 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 ZNF66Q6ZN08 573 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 SLC44A2Q8IWA5 706 aaPredicted RBP4.56□□□□□ -1.68
USP40-209ENST00000452724 Q8N9P0 234 aaPredicted RBP4.56□□□□□ -1.68
USP40-209ENST00000452724 STT3BQ8TCJ2 826 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 MORC4Q8TE76 937 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 NPIPB3Q92617 1050 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 FAR2Q96K12 515 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 RNF26Q9BY78 433 aaPredicted RBP4.56□□□□□ -1.68
USP40-209ENST00000452724 CDCP1Q9H5V8 836 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 PPCSQ9HAB8 311 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 AGO4Q9HCK5 861 aaKnown RBP4.56□□□□□ -1.68
USP40-209ENST00000452724 KCNK9Q9NPC2 374 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 PRDM8Q9NQV8 689 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 CNTN6Q9UQ52 1028 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 BTBD3Q9Y2F9 522 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 PCDHB7Q9Y5E2 793 aa4.56□□□□□ -1.68
USP40-209ENST00000452724 SPATA31A1Q5TZJ5 1347 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 LOC105369274A0A096LPK9 316 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 LOC102723532A0A0G2JNH3 316 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 FAM90A18PA6NE21 464 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 FAM90A16PA6NEW6 464 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 FAM90A9PA6NNJ1 464 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 FAM90A5PA8MXJ8 464 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 KIF28PB7ZC32 967 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 PPP6R2O75170 966 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 SLC3A2P08195 630 aaKnown RBP4.55□□□□□ -1.68
USP40-209ENST00000452724 FAM90A15PP0C7V4 464 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 FAM90A14PP0C7W9 464 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 CYP2A6P11509 494 aaPredicted RBP4.55□□□□□ -1.68
USP40-209ENST00000452724 VEGFAP15692 232 aaPredicted RBP4.55□□□□□ -1.68
USP40-209ENST00000452724 THBS4P35443 961 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 MMP13P45452 471 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 PNLIPRP1P54315 467 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 AP2B1P63010 937 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 MAPK7Q13164 816 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 SLC14A1Q13336 389 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 ETFDHQ16134 617 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 CNGA3Q16281 694 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 AAK1Q2M2I8 961 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 TRIM60Q495X7 471 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 CEP78Q5JTW2 689 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 CC2D1BQ5T0F9 858 aaKnown RBP4.55□□□□□ -1.68
USP40-209ENST00000452724 ANKRD40Q6AI12 368 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 TANGO2Q6ICL3 276 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 RANBP10Q6VN20 620 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 CCDC117Q8IWD4 279 aaPredicted RBP4.55□□□□□ -1.68
USP40-209ENST00000452724 OR4N4Q8N0Y3 316 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 OTUD7AQ8TE49 926 aaPredicted RBP4.55□□□□□ -1.68
USP40-209ENST00000452724 TRAPPC12Q8WVT3 735 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 GLMPQ8WWB7 406 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 CCT6BQ92526 530 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms