RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 RIOX1Q9H6W3 641 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 DNAJC18Q9H819 358 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 ZNF446Q9NWS9 450 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 KLK14Q9P0G3 267 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 SORCS3Q9UPU3 1222 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 STARD13Q9Y3M8 1113 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 SALL3Q9BXA9 1300 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 STK25O00506 426 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 B3GAT3O94766 335 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 MFN2O95140 757 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 UNC5CO95185 931 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 GSTM1P09488 218 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 STAG3L1P0CL83 205 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 PGAM1P18669 254 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 TNFRSF8P28908 595 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 CRABP2P29373 138 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 GCLCP48506 637 aaPredicted RBP7.97□□□□□ -1.13
NEDD9-204ENST00000448183 MAPK11Q15759 364 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 DGUOKQ16854 277 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 USP39Q53GS9 565 aaKnown RBP7.97□□□□□ -1.13
NEDD9-204ENST00000448183 ZNF484Q5JVG2 852 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 SPANXN2Q5MJ10 180 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 TYW3Q6IPR3 259 aaKnown RBP7.97□□□□□ -1.13
NEDD9-204ENST00000448183 ILDR2Q71H61 639 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 MIB1Q86YT6 1006 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 MSL3Q8N5Y2 521 aaKnown RBP7.97□□□□□ -1.13
NEDD9-204ENST00000448183 OMA1Q96E52 524 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 KAZALD1Q96I82 304 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 DEPDC7Q96QD5 511 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 PRKD2Q9BZL6 878 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 PDGFCQ9NRA1 345 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 RNF181Q9P0P0 153 aa7.97□□□□□ -1.13
NEDD9-204ENST00000448183 GNG14A0A1W2PPG7 69 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 PIPSLA2A3N6 862 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 CENPXA8MT69 81 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 TRDMT1O14717 391 aaKnown RBP7.96□□□□□ -1.13
NEDD9-204ENST00000448183 ALDH1A3P47895 512 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 CLCN3P51790 818 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 OXCT1P55809 520 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 BST2Q10589 180 aaKnown RBP7.96□□□□□ -1.13
NEDD9-204ENST00000448183 MAD2L1Q13257 205 aaPredicted RBP7.96□□□□□ -1.13
NEDD9-204ENST00000448183 KCTD21Q4G0X4 260 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 ERMARDQ5T6L9 678 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 TRIQKQ629K1 86 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 ERAP2Q6P179 960 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 CYP2R1Q6VVX0 501 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 KCNMB4Q86W47 210 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 FIG4Q92562 907 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 LRRC39Q96DD0 335 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 RNF145Q96MT1 663 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 CPNE1Q99829 537 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 GINS4Q9BRT9 223 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 UGT2B28Q9BY64 529 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 C6orf62Q9GZU0 229 aaPredicted RBP7.96□□□□□ -1.13
NEDD9-204ENST00000448183 HMG20AQ9NP66 347 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 RBM22Q9NW64 420 aaKnown RBP eCLIP7.96□□□□□ -1.133e-8■■■■□ 25.4
NEDD9-204ENST00000448183 UTP6Q9NYH9 597 aaKnown RBP7.96□□□□□ -1.13
NEDD9-204ENST00000448183 DNPEPQ9ULA0 475 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 CEMIPQ8WUJ3 1361 aa7.96□□□□□ -1.13
NEDD9-204ENST00000448183 FAM220BPB1ANY3 271 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 PARNO95453 639 aaKnown RBP7.96□□□□□ -1.14
NEDD9-204ENST00000448183 SLC2A4P14672 509 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 ETS1P14921 441 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 CENPAP49450 140 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 NAB1Q13506 487 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 SPANXN3Q5MJ09 141 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 ANKS6Q68DC2 871 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 B3GNT6Q6ZMB0 384 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 NECAB2Q7Z6G3 386 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 PTAR1Q7Z6K3 402 aaPredicted RBP7.96□□□□□ -1.14
NEDD9-204ENST00000448183 CROCCP3Q8IVE0 287 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 FAM126BQ8IXS8 530 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 MREGQ8N565 214 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 ZNF483Q8TF39 744 aaPredicted RBP7.96□□□□□ -1.14
NEDD9-204ENST00000448183 HTR3CQ8WXA8 447 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 YIPF2Q9BWQ6 316 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 TRIM8Q9BZR9 551 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 UBXN6Q9BZV1 441 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 TMEM39BQ9GZU3 492 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 COPS7BQ9H9Q2 264 aaPredicted RBP7.96□□□□□ -1.14
NEDD9-204ENST00000448183 UBAP1Q9NZ09 502 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 UBP1Q9NZI7 540 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 STK39Q9UEW8 545 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 ENOPH1Q9UHY7 261 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 DUSP12Q9UNI6 340 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 ACTL7BQ9Y614 415 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 FAM25AB3EWG3 89 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 FAM25CB3EWG5 89 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 FAM25GB3EWG6 89 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 CYB561D2O14569 222 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 RAP1GAPP47736 663 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 NPY2RP49146 381 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 ARL4DP49703 201 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 PSMC6P62333 389 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 SLC20A2Q08357 652 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 SNAPC2Q13487 334 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 RRP1BQ14684 758 aaKnown RBP7.96□□□□□ -1.14
NEDD9-204ENST00000448183 POU6F1Q14863 301 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 CNGA2Q16280 664 aa7.96□□□□□ -1.14
NEDD9-204ENST00000448183 PDZK1Q5T2W1 519 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms