RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 USP12O75317 370 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 TRIP4Q15650 581 aaPredicted RBP17.6■□□□□ 0.41
PTPRF-209ENST00000438120 KCNMB4Q86W47 210 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 TMCC3Q9ULS5 477 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 ARHGAP17Q68EM7 881 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 MFSD7Q6UXD7 560 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 FAM83AQ86UY5 434 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 HTR3CQ8WXA8 447 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 SMARCD1Q96GM5 515 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 L2HGDHQ9H9P8 463 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 TMEM39AQ9NV64 488 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 TNS2Q63HR2 1409 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 MEI4A8MW99 385 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 SCTRP47872 440 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 DOK6Q6PKX4 331 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 BNIPLQ7Z465 357 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 MIEF1Q9NQG6 463 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 SH3BP4Q9P0V3 963 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 GAKO14976 1311 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 UBXN8O00124 270 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 VAPBO95292 243 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 TGFB3P10600 412 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 RAG1P15918 1043 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 RPL21P46778 160 aaKnown RBP17.6■□□□□ 0.41
PTPRF-209ENST00000438120 ITIH5Q86UX2 942 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 TAGLN3Q9UI15 199 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 TPBGLP0DKB5 382 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 CBWD6Q4V339 395 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 KCNK18Q7Z418 384 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 CCDC3Q9BQI4 270 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 RPS6KB2Q9UBS0 482 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 PPP2R3BQ9Y5P8 575 aa17.6■□□□□ 0.41
PTPRF-209ENST00000438120 UBDO15205 165 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 ITIH4Q14624 930 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 RIPOR1Q6ZS17 1223 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 SYTL1Q8IYJ3 562 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 PURBQ96QR8 312 aaKnown RBP17.59■□□□□ 0.41
PTPRF-209ENST00000438120 SEPHS2Q99611 448 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 APBA2Q99767 749 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 PCDH9Q9HC56 1237 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 RIPK2O43353 540 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 CD151P48509 253 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 SENP6Q9GZR1 1112 aaPredicted RBP17.59■□□□□ 0.41
PTPRF-209ENST00000438120 ZMYM5Q9UJ78 669 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 PDZK1P1A8MUH7 402 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 YWHAQP27348 245 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 PTENP60484 403 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 CDH17Q12864 832 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 ZNF470Q6ECI4 717 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 NECAB2Q7Z6G3 386 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 E5RJQ4 531 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 VEGFAP15692 232 aaPredicted RBP17.59■□□□□ 0.41
PTPRF-209ENST00000438120 YBX3P16989 372 aaKnown RBP eCLIP17.59■□□□□ 0.411e-7■□□□□ 11
PTPRF-209ENST00000438120 SLC1A6P48664 564 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 DLG4P78352 724 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 HDAC7Q8WUI4 952 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 COPS5Q92905 334 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 KCTD14Q9BQ13 255 aaPredicted RBP17.59■□□□□ 0.41
PTPRF-209ENST00000438120 RGS18Q9NS28 235 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 DNPEPQ9ULA0 475 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 NCOA3Q9Y6Q9 1424 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 IFRD1O00458 451 aaPredicted RBP17.59■□□□□ 0.41
PTPRF-209ENST00000438120 PECAM1P16284 738 aaPredicted RBP17.59■□□□□ 0.41
PTPRF-209ENST00000438120 VAC14Q08AM6 782 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 PLD1Q13393 1074 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 ACVR2BQ13705 512 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 APOBEC3HQ6NTF7 200 aaKnown RBP17.59■□□□□ 0.41
PTPRF-209ENST00000438120 FIG4Q92562 907 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 FBXO44Q9H4M3 255 aa17.59■□□□□ 0.41
PTPRF-209ENST00000438120 RARAP10276 462 aa17.58■□□□□ 0.41
PTPRF-209ENST00000438120 PSEN2P49810 448 aa17.58■□□□□ 0.41
PTPRF-209ENST00000438120 TPGS1Q6ZTW0 290 aa17.58■□□□□ 0.41
PTPRF-209ENST00000438120 TRPC4APQ8TEL6 797 aa17.58■□□□□ 0.41
PTPRF-209ENST00000438120 FAM120BQ96EK7 910 aaKnown RBP17.58■□□□□ 0.41
PTPRF-209ENST00000438120 KANSL3Q9P2N6 904 aa17.58■□□□□ 0.41
PTPRF-209ENST00000438120 SAC3D1A6NKF1 404 aa17.58■□□□□ 0.41
PTPRF-209ENST00000438120 TOMM70O94826 608 aa17.58■□□□□ 0.41
PTPRF-209ENST00000438120 SLC35C1Q96A29 364 aa17.58■□□□□ 0.41
PTPRF-209ENST00000438120 TKTL2Q9H0I9 626 aa17.58■□□□□ 0.41
PTPRF-209ENST00000438120 HSMCR30P0CW71 290 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 CNTFP26441 200 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 GSSP48637 474 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 PEX5P50542 639 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 KPNA1P52294 538 aaPredicted RBP17.58■□□□□ 0.4
PTPRF-209ENST00000438120 PLK1P53350 603 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 ACOX1Q15067 660 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 TCEA2Q15560 299 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 TMEM119Q4V9L6 283 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 ANKS6Q68DC2 871 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 AADACL2Q6P093 401 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 DEFB107AQ8IZN7 70 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 DUSP9Q99956 384 aaKnown RBP17.58■□□□□ 0.4
PTPRF-209ENST00000438120 ANKZF1Q9H8Y5 726 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 SAE1Q9UBE0 346 aaPredicted RBP17.58■□□□□ 0.4
PTPRF-209ENST00000438120 H3BQF6 201 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 ACKR2O00590 384 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 UBOX5O94941 541 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 AKR1A1P14550 325 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 ZCCHC23Q6ZST2 131 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 GLT6D1Q7Z4J2 308 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms