RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 SLC22A9Q8IVM8 553 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 NSL1Q96IY1 281 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 IRX2Q9BZI1 471 aaPredicted RBP12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 PRKAG3Q9UGI9 489 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 TNNI3P19429 210 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 CYP2A7P20853 494 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 MMP14P50281 582 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 CBWD3Q5JTY5 395 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 CBWD5Q5RIA9 395 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 CES5AQ6NT32 575 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 TPGS1Q6ZTW0 290 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 TMEM253P0C7T8 217 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 VEGFAP15692 232 aaPredicted RBP12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 NR2C2P49116 596 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 FXR1P51114 621 aaKnown RBP eCLIP12.36□□□□□ -0.433e-8■■■■□ 23.7
CCDC88A-207ENST00000436346 SCUBE3Q8IX30 993 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 ACTR8Q9H981 624 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 SEPT3Q9UH03 358 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 KIAA1257Q9ULG3 409 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 TIMM13Q9Y5L4 95 aaPredicted RBP12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 LAMB4A4D0S4 1761 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 BEX3Q00994 111 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 ICE2Q659A1 982 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 ACOX2Q99424 681 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 UNKQ9C0B0 810 aaKnown RBP12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 RAB23Q9ULC3 237 aa12.36□□□□□ -0.43
CCDC88A-207ENST00000436346 CSF1RP07333 972 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 CYP2A6P11509 494 aaPredicted RBP12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 ZCCHC8Q6NZY4 707 aaKnown RBP12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 REPS1Q96D71 796 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 VPS51Q9UID3 782 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 TRAV19A0A0A6YYK7 116 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 IGF2BP3O00425 579 aaKnown RBP eCLIP12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 GYS1P13807 737 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 THOP1P52888 689 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 PRRG3Q9BZD7 231 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 PHACTR1Q9C0D0 580 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 WDR41Q9HAD4 459 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 PCDHB5Q9Y5E4 795 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 LTFP02788 710 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 TGFB3P10600 412 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 KRT77Q7Z794 578 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 DEFB132Q7Z7B7 95 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 PPP1R16AQ96I34 528 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 OSBPL6Q9BZF3 934 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 KLHL20Q9Y2M5 609 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 HNRNPCP07910 306 aaKnown RBP eCLIP12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 MAPK7Q13164 816 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 MTA1Q13330 715 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 PPIL2Q13356 520 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 BCL2L14Q9BZR8 327 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 SIK3Q9Y2K2 1263 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 PTPRUQ92729 1446 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 DLGAP3O95886 979 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 ATP6V1B1P15313 513 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 ERVK-9P63128 1117 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 ERVK-24P63145 666 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 VTA1Q9NP79 307 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 MICAL2O94851 1124 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 C16orf59Q7L2K0 433 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 IL17RAQ96F46 866 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 ZCCHC17Q9NP64 241 aaKnown RBP12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 HNRNPH2P55795 449 aaKnown RBP12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 ATAD3BQ5T9A4 648 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 ZNF473Q8WTR7 871 aaKnown RBP12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 KCNB2Q92953 911 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 CEP41Q9BYV8 373 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 CTNNAL1Q9UBT7 734 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 SHPRHQ149N8 1683 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 A8MX80 341 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 PPP1R3GB7ZBB8 358 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 SMIM22K7EJ46 135 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 TPST1O60507 370 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 SERPINF2P08697 491 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 CLTBP09497 229 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 FLT3P36888 993 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 CLK2P49760 499 aaKnown RBP12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 PALB2Q86YC2 1186 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 ARID3BQ8IVW6 561 aaPredicted RBP12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 LGI2Q8N0V4 545 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 GLMNQ92990 594 aa12.35□□□□□ -0.43
CCDC88A-207ENST00000436346 IGSF6O95976 241 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 CTSEP14091 401 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 CNPY3Q9BT09 278 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 TSPAN16Q9UKR8 245 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 B2RBV5 119 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 PTPN11Q06124 597 aaPredicted RBP12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 NR6A1Q15406 480 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 OLFML2BQ68BL8 750 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 SEMA4DQ92854 862 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 SH3GL1Q99961 368 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 PACSIN1Q9BY11 444 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 AHSPQ9NZD4 102 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 HPS5Q9UPZ3 1129 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 KLHL41O60662 606 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 IFNA14P01570 189 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 GIT2Q14161 759 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 ATP8B4Q8TF62 1192 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 TRIM8Q9BZR9 551 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms