RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 ADAM17P78536 824 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 TIAL1Q01085 375 aaKnown RBP eCLIP4.56□□□□□ -1.68
HMGB3-203ENST00000430118 CUL4BQ13620 913 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 CCNIQ14094 377 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 BOP1Q14137 746 aaKnown RBP4.56□□□□□ -1.68
HMGB3-203ENST00000430118 E2F2Q14209 437 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 CSHL1Q14406 222 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 HLXQ14774 488 aaPredicted RBP4.56□□□□□ -1.68
HMGB3-203ENST00000430118 GRM7Q14831 915 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 CSRP2Q16527 193 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 TBRG1Q3YBR2 411 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 PRR5LQ6MZQ0 368 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 RINT1Q6NUQ1 792 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 TAF2Q6P1X5 1199 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 ARHGEF18Q6ZSZ5 1173 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 TTC5Q8N0Z6 440 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 OR1N1Q8NGS0 311 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 FAM84AQ96KN4 292 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 LMF1Q96S06 567 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 OSBPL9Q96SU4 736 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 TLR10Q9BXR5 811 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 TTYH3Q9C0H2 523 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 SERHL2Q9H4I8 314 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 UNKLQ9H9P5 680 aaKnown RBP4.56□□□□□ -1.68
HMGB3-203ENST00000430118 PREBQ9HCU5 417 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 CD320Q9NPF0 282 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 BLOC1S4Q9NUP1 217 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 DAPP1Q9UN19 280 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 RNF114Q9Y508 228 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 ADAMTS7Q9UKP4 1686 aa4.56□□□□□ -1.68
HMGB3-203ENST00000430118 PNMA6EA0A0J9YXQ4 647 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 A0A1W2PS29 197 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 GXYLT2A0PJZ3 443 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 FYB1O15117 783 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 RGS10O43665 173 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 B4GALT4O60513 344 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 SRGAP2O75044 1071 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 SPATA31D3P0C874 917 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 RPS6KB1P23443 525 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 RBL1P28749 1068 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 EPHA3P29320 983 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 PRKAR1BP31321 381 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 CCR5P51681 352 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 ZNF134P52741 427 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 CHN2P52757 468 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 PRKAG1P54619 331 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 HUNKP57058 714 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 MESP2Q0VG99 397 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 SLC12A1Q13621 1099 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 KCNAB1Q14722 419 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 ELAVL1Q15717 326 aaKnown RBP4.55□□□□□ -1.68
HMGB3-203ENST00000430118 ZIK1Q3SY52 487 aaPredicted RBP4.55□□□□□ -1.68
HMGB3-203ENST00000430118 CTXN3Q4LDR2 81 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 SLFN13Q68D06 897 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 DGAT2L7PQ6IED9 249 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 SPATA31D4Q6ZUB0 917 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 CLNKQ7Z7G1 428 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 RNF169Q8NCN4 708 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 ADAMTS15Q8TE58 950 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 RILPL2Q969X0 211 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 MIEF2Q96C03 454 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 COG8Q96MW5 612 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 DCLRE1CQ96SD1 692 aaKnown RBP4.55□□□□□ -1.68
HMGB3-203ENST00000430118 DPYSL5Q9BPU6 564 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 PAAF1Q9BRP4 392 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 PLA2G12BQ9BX93 195 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 VPS16Q9H269 839 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 ELAC1Q9H777 363 aaKnown RBP4.55□□□□□ -1.68
HMGB3-203ENST00000430118 KCNK12Q9HB15 430 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 VPS45Q9NRW7 570 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 PLA2G3Q9NZ20 509 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 CTTNBP2NLQ9P2B4 639 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 POLG2Q9UHN1 485 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 PRDM4Q9UKN5 801 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 TBX20Q9UMR3 447 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 CNTN6Q9UQ52 1028 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 ZBTB1Q9Y2K1 713 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 DERAQ9Y315 318 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 CACNA1SQ13698 1873 aa4.55□□□□□ -1.68
HMGB3-203ENST00000430118 MYH14Q7Z406 1995 aaKnown RBP4.54□□□□□ -1.68
HMGB3-203ENST00000430118 hCG_1984214I3L0E3 225 aa4.54□□□□□ -1.68
HMGB3-203ENST00000430118 J3KTA2 159 aa4.54□□□□□ -1.68
HMGB3-203ENST00000430118 ZSCAN9O15535 394 aaPredicted RBP4.54□□□□□ -1.68
HMGB3-203ENST00000430118 NOBOXO60393 691 aa4.54□□□□□ -1.68
HMGB3-203ENST00000430118 VPS4BO75351 444 aa4.54□□□□□ -1.68
HMGB3-203ENST00000430118 TSPAN15O95858 294 aa4.54□□□□□ -1.68
HMGB3-203ENST00000430118 TBX18O95935 607 aa4.54□□□□□ -1.68
HMGB3-203ENST00000430118 CYP19A1P11511 503 aaPredicted RBP4.54□□□□□ -1.68
HMGB3-203ENST00000430118 HK1P19367 917 aa4.54□□□□□ -1.68
HMGB3-203ENST00000430118 SERPINA4P29622 427 aa4.54□□□□□ -1.68
HMGB3-203ENST00000430118 PDE6CP51160 858 aa4.54□□□□□ -1.68
HMGB3-203ENST00000430118 DCAF7P61962 342 aa4.54□□□□□ -1.68
HMGB3-203ENST00000430118 DLGAP5Q15398 846 aa4.54□□□□□ -1.68
HMGB3-203ENST00000430118 BAK1Q16611 211 aa4.54□□□□□ -1.68
HMGB3-203ENST00000430118 NRN1LQ496H8 165 aa4.54□□□□□ -1.68
HMGB3-203ENST00000430118 UBXN11Q5T124 520 aa4.54□□□□□ -1.68
HMGB3-203ENST00000430118 FAM102AQ5T9C2 384 aaPredicted RBP4.54□□□□□ -1.68
HMGB3-203ENST00000430118 METRNLQ641Q3 311 aa4.54□□□□□ -1.68
HMGB3-203ENST00000430118 RGMBQ6NW40 437 aa4.54□□□□□ -1.68
HMGB3-203ENST00000430118 ATG14Q6ZNE5 492 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms