RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 NFRKBQ6P4R8 1299 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 SERPINA13PQ6UXR4 307 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 PIK3AP1Q6ZUJ8 805 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 RRAGAQ7L523 313 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 SLC44A2Q8IWA5 706 aaPredicted RBP2.79□□□□□ -1.96
PTPRC-208ENST00000427110 DDX51Q8N8A6 666 aaKnown RBP eCLIP2.79□□□□□ -1.96
PTPRC-208ENST00000427110 PNPLA1Q8N8W4 532 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 OR1N1Q8NGS0 311 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 STT3BQ8TCJ2 826 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 SLC22A17Q8WUG5 538 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 TBC1D5Q92609 795 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 TBC1D20Q96BZ9 403 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 EID2BQ96D98 161 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 REXO5Q96IC2 774 aaKnown RBP2.79□□□□□ -1.96
PTPRC-208ENST00000427110 FAR2Q96K12 515 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 TRAPPC9Q96Q05 1148 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 ISCA1Q9BUE6 129 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 CIPCQ9C0C6 399 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 TAF1DQ9H5J8 278 aaPredicted RBP2.79□□□□□ -1.96
PTPRC-208ENST00000427110 CCDC134Q9H6E4 229 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 MLXIPQ9HAP2 919 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 SAYSD1Q9NPB0 183 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 PRDM8Q9NQV8 689 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 PDGFCQ9NRA1 345 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 FBXO28Q9NVF7 368 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 ZNF70Q9UC06 446 aaPredicted RBP2.79□□□□□ -1.96
PTPRC-208ENST00000427110 NFU1Q9UMS0 254 aa2.79□□□□□ -1.96
PTPRC-208ENST00000427110 LOC105378220A0A1B0GUY1 285 aaPredicted RBP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 CCDC189A1A4V9 331 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 EFCAB8A8MWE9 144 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 PRRT4C9JH25 899 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 CTIFO43310 598 aaKnown RBP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 CBFA2T3O75081 653 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 KRT38O76015 456 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 CER1O95813 267 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 LATS1O95835 1130 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 SLC3A2P08195 630 aaKnown RBP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 TMIGD3P0DMS9 266 aaPredicted RBP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 MYCLP12524 364 aaPredicted RBP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 MMP8P22894 467 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 THBS4P35443 961 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 IGHMBP2P38935 993 aaKnown RBP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 MAPK9P45984 424 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 AARSP49588 968 aaKnown RBP eCLIP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 PRKAA2P54646 552 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 HOXA4Q00056 320 aaPredicted RBP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 PSG6Q00889 435 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 SF3A3Q12874 501 aaKnown RBP eCLIP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 MTAPQ13126 283 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 PPFIA1Q13136 1202 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 KCNJ12Q14500 433 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 TAF12Q16514 161 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 AASDHQ4L235 1098 aaPredicted RBP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 AWAT1Q58HT5 328 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 RNASE12Q5GAN4 147 aaKnown RBP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 TMEM65Q6PI78 240 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 MTHFD1LQ6UB35 978 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 TRIM72Q6ZMU5 477 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 SYNE3Q6ZMZ3 975 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 TRABD2AQ86V40 505 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 C2CD5Q86YS7 1000 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 CNGA4Q8IV77 575 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 ANKRD18AQ8IVF6 992 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 SFTPA1Q8IWL2 248 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 CLASRPQ8N2M8 674 aaKnown RBP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 TERB1Q8NA31 727 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 SCAMP5Q8TAC9 235 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 SCARB1Q8WTV0 552 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 AFG1LQ8WV93 481 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 CPT1BQ92523 772 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 SMG7Q92540 1137 aaKnown RBP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 CTHRC1Q96CG8 243 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 DAZAP1Q96EP5 407 aaKnown RBP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 MCRS1Q96EZ8 462 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 RITA1Q96K30 269 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 ZSCAN31Q96LW9 406 aaPredicted RBP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 C5orf34Q96MH7 638 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 PABPC3Q9H361 631 aaKnown RBP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 SAP30LQ9HAJ7 183 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 ITM2CQ9NQX7 267 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 LIN7CQ9NUP9 197 aaKnown RBP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 FLRT1Q9NZU1 646 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 KIF17Q9P2E2 1029 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 KLHL13Q9P2N7 655 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 SRP68Q9UHB9 627 aaKnown RBP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 DAPP1Q9UN19 280 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 CNTN6Q9UQ52 1028 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 UBE2J1Q9Y385 318 aaPredicted RBP2.78□□□□□ -1.96
PTPRC-208ENST00000427110 PCDHB7Q9Y5E2 793 aa2.78□□□□□ -1.96
PTPRC-208ENST00000427110 FER1L4A9Z1Z3 1794 aa2.77□□□□□ -1.97
PTPRC-208ENST00000427110 SMIM35A0A1B0GVV1 85 aa2.77□□□□□ -1.97
PTPRC-208ENST00000427110 KCNU1A8MYU2 1149 aa2.77□□□□□ -1.97
PTPRC-208ENST00000427110 H0Y3Z8 333 aa2.77□□□□□ -1.97
PTPRC-208ENST00000427110 M0QYT0 321 aa2.77□□□□□ -1.97
PTPRC-208ENST00000427110 PPP6CO00743 305 aa2.77□□□□□ -1.97
PTPRC-208ENST00000427110 DHHO43323 396 aa2.77□□□□□ -1.97
PTPRC-208ENST00000427110 PRAMEF2O60811 474 aa2.77□□□□□ -1.97
PTPRC-208ENST00000427110 GCATO75600 419 aa2.77□□□□□ -1.97
PTPRC-208ENST00000427110 TJP3O95049 919 aa2.77□□□□□ -1.97
PTPRC-208ENST00000427110 LARGE1O95461 756 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms