RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 LDOC1O95751 146 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-204ENST00000423058 STAT5AP42229 794 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 EXOSC10Q01780 885 aaKnown RBP7.03□□□□□ -1.28
SCN1A-204ENST00000423058 USP41Q3LFD5 358 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 FAM98BQ52LJ0 330 aaKnown RBP7.03□□□□□ -1.28
SCN1A-204ENST00000423058 C2CD6Q53TS8 623 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 ARMC4Q5T2S8 1044 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 MROH9Q5TGP6 573 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 SVOPQ8N4V2 548 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 DNERQ8NFT8 737 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 ACSF2Q96CM8 615 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-204ENST00000423058 CYP3A43Q9HB55 503 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 NT5MQ9NPB1 228 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 ABI3Q9P2A4 366 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 SPATA2Q9UM82 520 aa7.03□□□□□ -1.28
SCN1A-204ENST00000423058 MED24O75448 989 aa7.02□□□□□ -1.28
SCN1A-204ENST00000423058 LYNP07948 512 aa7.02□□□□□ -1.28
SCN1A-204ENST00000423058 PNMA6AP0CW24 399 aaPredicted RBP7.02□□□□□ -1.28
SCN1A-204ENST00000423058 HSMCR30P0CW71 290 aa7.02□□□□□ -1.28
SCN1A-204ENST00000423058 TGFB3P10600 412 aa7.02□□□□□ -1.28
SCN1A-204ENST00000423058 RBP3P10745 1247 aa7.02□□□□□ -1.28
SCN1A-204ENST00000423058 TGFB2P61812 414 aa7.02□□□□□ -1.28
SCN1A-204ENST00000423058 RPS6P62753 249 aaKnown RBP7.02□□□□□ -1.28
SCN1A-204ENST00000423058 RGS1Q08116 209 aa7.02□□□□□ -1.28
SCN1A-204ENST00000423058 SBK1Q52WX2 424 aa7.02□□□□□ -1.28
SCN1A-204ENST00000423058 ARMC3Q5W041 872 aa7.02□□□□□ -1.28
SCN1A-204ENST00000423058 KIAA0408Q6ZU52 694 aa7.02□□□□□ -1.28
SCN1A-204ENST00000423058 PAGE2Q7Z2X7 111 aa7.02□□□□□ -1.28
SCN1A-204ENST00000423058 SPATA4Q8NEY3 305 aa7.02□□□□□ -1.28
SCN1A-204ENST00000423058 PRMT6Q96LA8 375 aaPredicted RBP7.02□□□□□ -1.28
SCN1A-204ENST00000423058 BDH2Q9BUT1 245 aa7.02□□□□□ -1.28
SCN1A-204ENST00000423058 CORO2BQ9UQ03 480 aa7.02□□□□□ -1.28
SCN1A-204ENST00000423058 BCLAF3A2AJT9 711 aaKnown RBP7.02□□□□□ -1.29
SCN1A-204ENST00000423058 C1QTNF3-AMACRE9PGA6 284 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 ANXA6P08133 673 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 UCHL3P15374 230 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 VEGFAP15692 232 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-204ENST00000423058 IGFALSP35858 605 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 RPL3P39023 403 aaKnown RBP7.02□□□□□ -1.29
SCN1A-204ENST00000423058 DSG1Q02413 1049 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 KPNB1Q14974 876 aaKnown RBP7.02□□□□□ -1.29
SCN1A-204ENST00000423058 TLK2Q86UE8 772 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 KLHL23Q8NBE8 558 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 PLEKHF1Q96S99 279 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 RRAGDQ9NQL2 400 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-204ENST00000423058 TBX4P57082 545 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 PTGISQ16647 500 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 TMEM26Q6ZUK4 368 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 SGMS1Q86VZ5 419 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 FAR1Q8WVX9 515 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 PHF20Q9BVI0 1012 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 YIPF3Q9GZM5 350 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 MRPL17Q9NRX2 175 aaKnown RBP7.02□□□□□ -1.29
SCN1A-204ENST00000423058 ADPRHL2Q9NX46 363 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 RBM7Q9Y580 266 aaKnown RBP7.02□□□□□ -1.29
SCN1A-204ENST00000423058 PNMA8CA0A1B0GUJ8 204 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 QSOX1O00391 747 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 RAMP2O60895 175 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 BCL2L1Q07817 233 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 NFYCQ13952 458 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 TRIM16LQ309B1 348 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 GLT6D1Q7Z4J2 308 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 RASGEF1AQ8N9B8 481 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 ASB2Q96Q27 587 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 IL1RAPL1Q9NZN1 696 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 VANGL2Q9ULK5 521 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 ANKDD1BA6NHY2 528 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 MYBP10242 640 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 GPD2P43304 727 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 ZNF135P52742 658 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-204ENST00000423058 AP1S2P56377 157 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 NR6A1Q15406 480 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 PTPN21Q16825 1174 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 INSCQ1MX18 579 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 LRRC36Q1X8D7 754 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 ATP13A4Q4VNC1 1196 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 OLFML2BQ68BL8 750 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 DENND5BQ6ZUT9 1274 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 SH3BP5LQ7L8J4 393 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 MIER2Q8N344 545 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 TRPV3Q8NET8 790 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 NACC2Q96BF6 587 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 FAM84BQ96KN1 310 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-204ENST00000423058 KLC4Q9NSK0 619 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 ZNF214Q9UL59 606 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-204ENST00000423058 ANKRD6Q9Y2G4 727 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 PCDHGC5Q9Y5F6 944 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 LRRIQ1Q96JM4 1722 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 MAGEB3O15480 346 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 CCNDBP1O95273 360 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 LSM8O95777 96 aaKnown RBP7.02□□□□□ -1.29
SCN1A-204ENST00000423058 IFNA16P05015 189 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 PDHBP11177 359 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 ATP6V1B2P21281 511 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 MRPS25P82663 173 aaKnown RBP7.02□□□□□ -1.29
SCN1A-204ENST00000423058 TRAF2Q12933 501 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 KYNUQ16719 465 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 DGKKQ5KSL6 1271 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 MARC1Q5VT66 337 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 LRRC6Q86X45 466 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms