RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 ARID5BQ14865 1188 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 NADSYN1Q6IA69 706 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 FSTL4Q6MZW2 842 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 PPP1R2P3Q6NXS1 205 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 WDR59Q6PJI9 974 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 VPS36Q86VN1 386 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 UNC45BQ8IWX7 931 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 FAM217AQ8IXS0 508 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 CPXM2Q8N436 756 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 OR8K1Q8NGG5 319 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 CD101Q93033 1021 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 ZNF653Q96CK0 615 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 P2RY13Q9BPV8 354 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 BBS2Q9BXC9 721 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 RBM12Q9NTZ6 932 aaKnown RBP12.97□□□□□ -0.33
SKA1-203ENST00000417656 PLK2Q9NYY3 685 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 MARK1Q9P0L2 795 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 ADAMTS1Q9UHI8 967 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 SIT1Q9Y3P8 196 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 ZNF318Q5VUA4 2279 aa12.97□□□□□ -0.33
SKA1-203ENST00000417656 A0A087X0T9 212 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 GOLGA6L7A0A1B0GV03 622 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 AKR1B15C9JRZ8 316 aaPredicted RBP12.96□□□□□ -0.33
SKA1-203ENST00000417656 ACSL4O60488 711 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 TSPAN3O60637 253 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 FTLP02792 175 aaPredicted RBP12.96□□□□□ -0.33
SKA1-203ENST00000417656 FAM228BP0C875 321 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 KRT3P12035 628 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 GZMAP12544 262 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 TYRP14679 529 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 AVPR2P30518 371 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 SLC6A4P31645 630 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 GBP1P32455 592 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 EIF4A3P38919 411 aaKnown RBP12.96□□□□□ -0.33
SKA1-203ENST00000417656 SLC6A11P48066 632 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 SLC11A2P49281 568 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 SGSHP51688 502 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 ATXN1P54253 815 aaKnown RBP12.96□□□□□ -0.33
SKA1-203ENST00000417656 DEUP1Q05D60 604 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 MESP2Q0VG99 397 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 SLC25A52Q3SY17 297 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 FAM133BQ5BKY9 247 aaKnown RBP12.96□□□□□ -0.33
SKA1-203ENST00000417656 TMEM196Q5HYL7 178 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 RFWD3Q6PCD5 774 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 ARCQ7LC44 396 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 CNGA4Q8IV77 575 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 ETFBKMTQ8IXQ9 262 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 NAT16Q8N8M0 369 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 RXFP2Q8WXD0 754 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 EZH1Q92800 747 aaPredicted RBP12.96□□□□□ -0.33
SKA1-203ENST00000417656 RNF34Q969K3 372 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 PRICKLE1Q96MT3 831 aaPredicted RBP12.96□□□□□ -0.33
SKA1-203ENST00000417656 MCEEQ96PE7 176 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 NELL2Q99435 816 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 OSBPL6Q9BZF3 934 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 FBRSL1Q9HCM7 1045 aaKnown RBP12.96□□□□□ -0.33
SKA1-203ENST00000417656 PIGVQ9NUD9 493 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 ZNHIT6Q9NWK9 470 aaKnown RBP12.96□□□□□ -0.33
SKA1-203ENST00000417656 RRN3Q9NYV6 651 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 DLGAP2Q9P1A6 1054 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 STOML2Q9UJZ1 356 aa12.96□□□□□ -0.33
SKA1-203ENST00000417656 C2CD4BA6NLJ0 364 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 GFRA2O00451 464 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 CACNG3O60359 315 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 RTN2O75298 545 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 TULP3O75386 442 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 EGFP01133 1207 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 PENKP01210 267 aaPredicted RBP12.95□□□□□ -0.34
SKA1-203ENST00000417656 CYBBP04839 570 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 CHRNB1P11230 501 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 GPD1P21695 349 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 SDC4P31431 198 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 CCR1P32246 355 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 RFC1P35251 1148 aaPredicted RBP12.95□□□□□ -0.34
SKA1-203ENST00000417656 CHKAP35790 457 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 GGCXP38435 758 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 GALK1P51570 392 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 ATP11AP98196 1134 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 GRSF1Q12849 480 aaKnown RBP eCLIP12.95□□□□□ -0.34
SKA1-203ENST00000417656 FZD5Q13467 585 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 CCINQ13939 588 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 LRRC32Q14392 662 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 CDO1Q16878 200 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 C15orf59Q2T9L4 293 aaPredicted RBP12.95□□□□□ -0.34
SKA1-203ENST00000417656 RAB6CQ53S08 254 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 PPP1R15BQ5SWA1 713 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 ADGRF1Q5T601 910 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 FYB2Q5VWT5 728 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 RAP1GAP2Q684P5 730 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 Q6ZS52 159 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 BNIPLQ7Z465 357 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 CHSY1Q86X52 802 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 SFTPA1Q8IWL2 248 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 TC2NQ8N9U0 490 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 NT5C3BQ969T7 300 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 MYEOVQ96EZ4 313 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 RAB6CQ9H0N0 254 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 LMAN1LQ9HAT1 526 aa12.95□□□□□ -0.34
SKA1-203ENST00000417656 DNAJC17Q9NVM6 304 aaKnown RBP12.95□□□□□ -0.34
SKA1-203ENST00000417656 CNOT8Q9UFF9 292 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms