RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 COG7P83436 770 aa10.65□□□□□ -0.7
COL6A3-205ENST00000392004 MMRN1Q13201 1228 aa10.65□□□□□ -0.7
COL6A3-205ENST00000392004 CUL1Q13616 776 aa10.65□□□□□ -0.7
COL6A3-205ENST00000392004 NUDT18Q6ZVK8 323 aa10.65□□□□□ -0.7
COL6A3-205ENST00000392004 TPCN2Q8NHX9 752 aa10.65□□□□□ -0.7
COL6A3-205ENST00000392004 KRT35Q92764 455 aa10.65□□□□□ -0.7
COL6A3-205ENST00000392004 TBCBQ99426 244 aa10.65□□□□□ -0.7
COL6A3-205ENST00000392004 NEDD8-MDP1E9PL57 170 aa10.65□□□□□ -0.71
COL6A3-205ENST00000392004 GRM6O15303 877 aa10.65□□□□□ -0.71
COL6A3-205ENST00000392004 ASMTLO95671 621 aa10.65□□□□□ -0.71
COL6A3-205ENST00000392004 FOSL2P15408 326 aa10.65□□□□□ -0.71
COL6A3-205ENST00000392004 SARNPP82979 210 aaKnown RBP10.65□□□□□ -0.71
COL6A3-205ENST00000392004 SH3PXD2AQ5TCZ1 1133 aa10.65□□□□□ -0.71
COL6A3-205ENST00000392004 SEC16BQ96JE7 1060 aa10.65□□□□□ -0.71
COL6A3-205ENST00000392004 TRIM51Q9BSJ1 452 aa10.65□□□□□ -0.71
COL6A3-205ENST00000392004 SYNDIG1Q9H7V2 258 aa10.65□□□□□ -0.71
COL6A3-205ENST00000392004 AIPL1Q9NZN9 384 aa10.65□□□□□ -0.71
COL6A3-205ENST00000392004 NOVA2Q9UNW9 492 aaKnown RBP10.65□□□□□ -0.71
COL6A3-205ENST00000392004 RREB1Q92766 1687 aa10.65□□□□□ -0.71
COL6A3-205ENST00000392004 MIF4GDA9UHW6 222 aaKnown RBP10.64□□□□□ -0.71
COL6A3-205ENST00000392004 PJA2O43164 708 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 RPSAP08865 295 aaKnown RBP10.64□□□□□ -0.71
COL6A3-205ENST00000392004 CNPP09543 421 aaKnown RBP10.64□□□□□ -0.71
COL6A3-205ENST00000392004 PMLP29590 882 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 HNRNPH3P31942 346 aaKnown RBP10.64□□□□□ -0.71
COL6A3-205ENST00000392004 MARCKSL1P49006 195 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 CSE1LP55060 971 aaKnown RBP10.64□□□□□ -0.71
COL6A3-205ENST00000392004 PPP2R2AP63151 447 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 RAB30Q15771 203 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 CCDC137Q6PK04 289 aaKnown RBP10.64□□□□□ -0.71
COL6A3-205ENST00000392004 CPNE8Q86YQ8 564 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 MFN1Q8IWA4 741 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 ZNF366Q8N895 744 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 ANKLE1Q8NAG6 615 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 MCUQ8NE86 351 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 CSGALNACT1Q8TDX6 532 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 ZFYVE19Q96K21 471 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 TOX2Q96NM4 488 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 UPF3AQ9H1J1 476 aaKnown RBP10.64□□□□□ -0.71
COL6A3-205ENST00000392004 CCDC68Q9H2F9 335 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 CPQQ9Y646 472 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 TRAV19A0A0A6YYK7 116 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 MAPK13O15264 365 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 RASSF9O75901 435 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 HSPA9P38646 679 aaKnown RBP10.64□□□□□ -0.71
COL6A3-205ENST00000392004 ASPAP45381 313 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 ARSEP51690 589 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 RAD51Q06609 339 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 IRF2BP2Q7Z5L9 587 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 DDX42Q86XP3 938 aaKnown RBP eCLIP10.64□□□□□ -0.71
COL6A3-205ENST00000392004 GRIN3AQ8TCU5 1115 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 MIEF2Q96C03 454 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 TRIM62Q9BVG3 475 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 RAB17Q9H0T7 212 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 CCSER2Q9H7U1 834 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 OR12D3Q9UGF7 316 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 E2F8A0AVK6 867 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 RAD51CO43502 376 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 RTN3O95197 1032 aaPredicted RBP10.64□□□□□ -0.71
COL6A3-205ENST00000392004 EPCAMP16422 314 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 NOMO3P69849 1222 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 NR1H3Q13133 447 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 FAM187BQ17R55 369 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 CHPFQ8IZ52 775 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 FUKQ8N0W3 1084 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 ARHGAP18Q8N392 663 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 OR10T2Q8NGX3 314 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 TOP1MTQ969P6 601 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 ATP13A1Q9HD20 1204 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 PCDHB8Q9UN66 801 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 YIPF1Q9Y548 306 aa10.64□□□□□ -0.71
COL6A3-205ENST00000392004 KPNA3O00505 521 aaPredicted RBP10.63□□□□□ -0.71
COL6A3-205ENST00000392004 ADAM12O43184 909 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 BMPR1AP36894 532 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 DHX9Q08211 1270 aaKnown RBP10.63□□□□□ -0.71
COL6A3-205ENST00000392004 CRYMQ14894 314 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 UPP1Q16831 310 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 SDE2Q6IQ49 451 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 HFE2Q6ZVN8 426 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 FAM124AQ86V42 546 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 EXT2Q93063 718 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 TBC1D31Q96DN5 1066 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 SLC9A7Q96T83 725 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 DDX50Q9BQ39 737 aaKnown RBP10.63□□□□□ -0.71
COL6A3-205ENST00000392004 ACBD6Q9BR61 282 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 CNTN3Q9P232 1028 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.63□□□□□ -0.71
COL6A3-205ENST00000392004 PHIPQ8WWQ0 1821 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.63□□□□□ -0.71
COL6A3-205ENST00000392004 ITGB8P26012 769 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 SERPINB6P35237 376 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 HSD17B3P37058 310 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 BOLA3Q53S33 107 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 HIBCHQ6NVY1 386 aaPredicted RBP10.63□□□□□ -0.71
COL6A3-205ENST00000392004 COLGALT1Q8NBJ5 622 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 CCDC197Q8NCU1 140 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 OR2W6PQ8NHA6 318 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 TMEM121Q9BTD3 319 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 NT5MQ9NPB1 228 aa10.63□□□□□ -0.71
COL6A3-205ENST00000392004 TMPRSS4Q9NRS4 437 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms