RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 DCDC2Q9UHG0 476 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 ZNF142P52746 1687 aaPredicted RBP13.56□□□□□ -0.24
NPHP4-203ENST00000378169 PSMB4P28070 264 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 SERPINB5P36952 375 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 PLEKHA7Q6IQ23 1121 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 ARHGAP18Q8N392 663 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 NDRG1Q92597 394 aaKnown RBP13.56□□□□□ -0.24
NPHP4-203ENST00000378169 GMLQ99445 158 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 ZCWPW1Q9H0M4 648 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 NRDE2Q9H7Z3 1164 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 UTP6Q9NYH9 597 aaKnown RBP13.56□□□□□ -0.24
NPHP4-203ENST00000378169 CDYLQ9Y232 598 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 PKP3Q9Y446 797 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 NCF1BA6NI72 391 aaPredicted RBP13.56□□□□□ -0.24
NPHP4-203ENST00000378169 SLC15A5A6NIM6 579 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 NCF1CA8MVU1 366 aaPredicted RBP13.56□□□□□ -0.24
NPHP4-203ENST00000378169 DCDC2CA8MYV0 355 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 FOXO6A8MYZ6 492 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 PYGLP06737 847 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 ERVK-10P10266 1014 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 NCF1P14598 390 aaPredicted RBP13.56□□□□□ -0.24
NPHP4-203ENST00000378169 CD52P31358 61 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 RASA2Q15283 850 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 TTC30AQ86WT1 665 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 ARRDC4Q8NCT1 418 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 PPTC7Q8NI37 304 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 HSFY1Q96LI6 401 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 DRC3Q9H069 523 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 SLCO1B3Q9NPD5 702 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 ORC6Q9Y5N6 252 aa13.56□□□□□ -0.24
NPHP4-203ENST00000378169 NCAM2O15394 837 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 TREHO43280 583 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 LRCH4O75427 683 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 CBX6O95503 412 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 SERPINB8P50452 374 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 NUDT2P50583 147 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 GIPC2Q8TF65 315 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 ZNF75CPQ92670 426 aaPredicted RBP13.55□□□□□ -0.24
NPHP4-203ENST00000378169 APBA2Q99767 749 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 ELOVL4Q9GZR5 314 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 MRPL46Q9H2W6 279 aaKnown RBP13.55□□□□□ -0.24
NPHP4-203ENST00000378169 TM9SF1O15321 606 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 ALDH1A1P00352 501 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 GP5P40197 560 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 NR2C2P49116 596 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 COPAP53621 1224 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 TBX4P57082 545 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 PLIN5Q00G26 463 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 PDE1CQ14123 709 aaPredicted RBP13.55□□□□□ -0.24
NPHP4-203ENST00000378169 SLC45A4Q5BKX6 768 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 FAM182AQ5T1J6 154 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 MRNIPQ6NTE8 343 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 DDX53Q86TM3 631 aaKnown RBP13.55□□□□□ -0.24
NPHP4-203ENST00000378169 RPAINQ86UA6 219 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 DCUN1D1Q96GG9 259 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 RBPJLQ9UBG7 517 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 DRG1Q9Y295 367 aaKnown RBP13.55□□□□□ -0.24
NPHP4-203ENST00000378169 TBKBP1A7MCY6 615 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 MBL2P11226 248 aaPredicted RBP13.55□□□□□ -0.24
NPHP4-203ENST00000378169 CCND1P24385 295 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 ICAM3P32942 547 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 GRM5P41594 1212 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 CDH17Q12864 832 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 MAPRE2Q15555 327 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 SDHAF4Q5VUM1 108 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 TSHZ1Q6ZSZ6 1077 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 OR52K1Q8NGK4 314 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 KCNK16Q96T55 309 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 GPAMQ9HCL2 828 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 LRP6O75581 1613 aa13.55□□□□□ -0.24
NPHP4-203ENST00000378169 F8W8V4 182 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 NUDT17P0C025 328 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 OR1E1P30953 314 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 BRCC3P46736 316 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.54□□□□□ -0.24
NPHP4-203ENST00000378169 TIGD7Q6NT04 549 aaPredicted RBP13.54□□□□□ -0.24
NPHP4-203ENST00000378169 MON1BQ7L1V2 547 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 TMEM192Q8IY95 271 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 SEPT8Q92599 483 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 PHF21BQ96EK2 531 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 CASS4Q9NQ75 786 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 TRPM5Q9NZQ8 1165 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 PCDHB5Q9Y5E4 795 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 A0A096LPK6 155 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 SMIM28A0A1B0GU29 152 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 RAMP2O60895 175 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 SERPINB3P29508 390 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 AGAP9Q5VTM2 703 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 POLNQ7Z5Q5 900 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 RXFP1Q9HBX9 757 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 ESRRBO95718 433 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 PLK1P53350 603 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 BFSP2Q13515 415 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 RCN1Q15293 331 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 ZNF470Q6ECI4 717 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 KCNMB4Q86W47 210 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 ZNF516Q92618 1163 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 PPP1R2P1Q96PQ5 205 aa13.54□□□□□ -0.24
NPHP4-203ENST00000378169 EIF2AQ9BY44 585 aaKnown RBP13.54□□□□□ -0.24
NPHP4-203ENST00000378169 VPS28Q9UK41 221 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms