RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 AKAP1Q92667 903 aaKnown RBP eCLIP2.58□□□□□ -2
VPS13A-206ENST00000376646 PMM1Q92871 262 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 CELF1Q92879 486 aaKnown RBP2.58□□□□□ -2
VPS13A-206ENST00000376646 TTC17Q96AE7 1141 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 MSI2Q96DH6 328 aaKnown RBP2.58□□□□□ -2
VPS13A-206ENST00000376646 TRMOQ9BU70 441 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 UNKQ9C0B0 810 aaKnown RBP2.58□□□□□ -2
VPS13A-206ENST00000376646 BTBD1Q9H0C5 482 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 NUP62CLQ9H1M0 184 aa2.58□□□□□ -2
VPS13A-206ENST00000376646 SEMA4BQ9NPR2 832 aaPredicted RBP2.58□□□□□ -2
VPS13A-206ENST00000376646 IGLV5-39A0A0G2JS06 123 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 GTPBP1O00178 669 aaKnown RBP2.57□□□□□ -2
VPS13A-206ENST00000376646 ZSCAN9O15535 394 aaPredicted RBP2.57□□□□□ -2
VPS13A-206ENST00000376646 THAP12O43422 761 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 TULP3O75386 442 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 NBPF7P0C2Y1 421 aaPredicted RBP2.57□□□□□ -2
VPS13A-206ENST00000376646 PECAM1P16284 738 aaPredicted RBP2.57□□□□□ -2
VPS13A-206ENST00000376646 TSHRP16473 764 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 FGFR2P21802 821 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 IGHMBP2P38935 993 aaKnown RBP2.57□□□□□ -2
VPS13A-206ENST00000376646 PRIM2P49643 509 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 NEK3P51956 506 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 P3H1Q32P28 736 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 FAXCQ5TGI0 409 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 FAM57BQ71RH2 274 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 ADGRF4Q8IZF3 695 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 RNF152Q8N8N0 203 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 ATP11CQ8NB49 1132 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 EME1Q96AY2 570 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 MPHOSPH6Q99547 160 aaKnown RBP2.57□□□□□ -2
VPS13A-206ENST00000376646 PCGF6Q9BYE7 350 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 PCDHAC1Q9H158 963 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 ZMYND8Q9ULU4 1186 aaPredicted RBP2.57□□□□□ -2
VPS13A-206ENST00000376646 A0A0G2JK05 382 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 COQ9O75208 318 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 CD63P08962 238 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 SLC5A1P13866 664 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 STAT6P42226 847 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 SOX2P48431 317 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 PPATQ06203 517 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 BIRC2Q13490 618 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 HDAC1Q13547 482 aaPredicted RBP2.57□□□□□ -2
VPS13A-206ENST00000376646 PGM5Q15124 567 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 GPR162Q16538 588 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 PRTGQ2VWP7 1150 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 TMEM63BQ5T3F8 832 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 KIAA1161Q6NSJ0 714 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 C16orf89Q6UX73 402 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 KIAA0408Q6ZU52 694 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 PIK3AP1Q6ZUJ8 805 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 RHPN2Q8IUC4 686 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 KRT78Q8N1N4 520 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 TMEM199Q8N511 208 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 ARL14EPQ8N8R7 260 aaPredicted RBP2.57□□□□□ -2
VPS13A-206ENST00000376646 ABHD5Q8WTS1 349 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 NLRP4Q96MN2 994 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 RPS6KC1Q96S38 1066 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 ELOVL1Q9BW60 279 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 MLXIPQ9HAP2 919 aa2.57□□□□□ -2
VPS13A-206ENST00000376646 DDX21Q9NR30 783 aaKnown RBP eCLIP2.57□□□□□ -2
VPS13A-206ENST00000376646 RGS17Q9UGC6 210 aaPredicted RBP2.57□□□□□ -2
VPS13A-206ENST00000376646 SPATA31A1Q5TZJ5 1347 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 CNTNAP2Q9UHC6 1331 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 TRBV5-3A0A0A0MS03 114 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 A6NNC1 897 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 PMM2O15305 246 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 SMAD6O43541 496 aaKnown RBP2.56□□□□□ -2
VPS13A-206ENST00000376646 EPN2O95208 641 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 MYL3P08590 195 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 HOXA11P31270 313 aaPredicted RBP2.56□□□□□ -2
VPS13A-206ENST00000376646 HOXD12P35452 270 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 B4GALNT1Q00973 533 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 SEMA3BQ13214 749 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 PICALMQ13492 652 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 BRD3Q15059 726 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 MIDNQ504T8 468 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 MANEAQ5SRI9 462 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 DHRS13Q6UX07 377 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 RFX8Q6ZV50 586 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 SVIPQ8NHG7 77 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 PARD3BQ8TEW8 1205 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 SLC39A13Q96H72 371 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 MARK4Q96L34 752 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 GPR78Q96P69 363 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 TBCBQ99426 244 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 POLR3GLQ9BT43 218 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 CHMP4AQ9BY43 222 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 HIPK2Q9H2X6 1198 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 ZBTB26Q9HCK0 441 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 CCNT2O60583 730 aaKnown RBP2.56□□□□□ -2
VPS13A-206ENST00000376646 OAZ2O95190 189 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 PLA2G2AP14555 144 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 CDKN2AP42771 156 aaKnown RBP2.56□□□□□ -2
VPS13A-206ENST00000376646 STT3AP46977 705 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 ZNF84P51523 738 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 CASP5P51878 434 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 DGKQP52824 942 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 TWIST1Q15672 202 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 DAB2IPQ5VWQ8 1189 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 B4GALNT4Q76KP1 1039 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms