RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 SHCBP1Q8NEM2 672 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 VPS45Q9NRW7 570 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 LYPLA1O75608 230 aaPredicted RBP6.23□□□□□ -1.41
VPS13B-203ENST00000358544 STIP1P31948 543 aaKnown RBP6.23□□□□□ -1.41
VPS13B-203ENST00000358544 COPZ1P61923 177 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 COX10Q12887 443 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 FAM83EQ2M2I3 478 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 TIMM50Q3ZCQ8 353 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 COBLL1Q53SF7 1204 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 LDLRAP1Q5SW96 308 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 NSMCE3Q96MG7 304 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 EHD1Q9H4M9 534 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 OSGEPQ9NPF4 335 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 PICK1Q9NRD5 415 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 ANAPC2Q9UJX6 822 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 TMEM114B3SHH9 223 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 ZNF682O95780 498 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 GLRA2P23416 452 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 NEK3P51956 506 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 DRG2P55039 364 aaKnown RBP6.23□□□□□ -1.41
VPS13B-203ENST00000358544 ADGRE1Q14246 886 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 ACAD10Q6JQN1 1059 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 RHOBTB2Q9BYZ6 727 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 FAM237BA0A1B0GVD1 139 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 ATP9BO43861 1147 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 PARNO95453 639 aaKnown RBP6.23□□□□□ -1.41
VPS13B-203ENST00000358544 PEX3P56589 373 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 FAM47BQ8NA70 645 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 SLC44A5Q8NCS7 719 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 SPOCK2Q92563 424 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 HDHD2Q9H0R4 259 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.23□□□□□ -1.412e-7■■■■■ 26.8
VPS13B-203ENST00000358544 AMPD1P23109 780 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 TSC22D1Q15714 1073 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 CMPK2Q5EBM0 449 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 ZC3H12CQ9C0D7 883 aaKnown RBP6.23□□□□□ -1.41
VPS13B-203ENST00000358544 XPNPEP3Q9NQH7 507 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 ITM2BQ9Y287 266 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 NRXN1Q9ULB1 1477 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 C2CD3Q4AC94 2353 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 USP12O75317 370 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 ELK3P41970 407 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 ACLYP53396 1101 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 GTF2IP78347 998 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 ACAP2Q15057 778 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 OTUB1Q96FW1 271 aaPredicted RBP6.23□□□□□ -1.41
VPS13B-203ENST00000358544 SEPHS2Q99611 448 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 SLCO1B3Q9NPD5 702 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 AVENQ9NQS1 362 aaPredicted RBP6.23□□□□□ -1.41
VPS13B-203ENST00000358544 TMEM161AQ9NX61 479 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 DUSP12Q9UNI6 340 aa6.23□□□□□ -1.41
VPS13B-203ENST00000358544 TRIM38O00635 465 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 RBP3P10745 1247 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 ACAT1P24752 427 aaKnown RBP6.22□□□□□ -1.41
VPS13B-203ENST00000358544 AVPR1AP37288 418 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 BTN2A1Q7KYR7 527 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 WRNIP1Q96S55 665 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 CPNE1Q99829 537 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 CDH22Q9UJ99 828 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 BARX2Q9UMQ3 279 aaPredicted RBP6.22□□□□□ -1.41
VPS13B-203ENST00000358544 PROSCO94903 275 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 IL6P05231 212 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 ENO2P09104 434 aaPredicted RBP6.22□□□□□ -1.41
VPS13B-203ENST00000358544 KLRC3Q07444 240 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 ILF2Q12905 390 aaKnown RBP6.22□□□□□ -1.41
VPS13B-203ENST00000358544 BOLA3Q53S33 107 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 C4orf22Q6V702 233 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 HAUS6Q7Z4H7 955 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 PIGWQ7Z7B1 504 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 SH3RF3Q8TEJ3 882 aaPredicted RBP6.22□□□□□ -1.41
VPS13B-203ENST00000358544 ZNF638Q14966 1978 aaKnown RBP6.22□□□□□ -1.41
VPS13B-203ENST00000358544 SCN9AQ15858 1988 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 EPHB6O15197 1021 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 HUS1O60921 280 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 PURAQ00577 322 aaKnown RBP6.22□□□□□ -1.41
VPS13B-203ENST00000358544 NCF4Q15080 339 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 PAGE2BQ5JRK9 111 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 BAP1Q92560 729 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 TAS2R14Q9NYV8 317 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 ZNF224Q9NZL3 707 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 CD274Q9NZQ7 290 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 CROCC2H7BZ55 1655 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 KIAA2026Q5HYC2 2103 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 CLDN25C9JDP6 229 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 MYL4P12829 197 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 CACHD1Q5VU97 1274 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 TTC23Q5W5X9 447 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 THNSL1Q8IYQ7 743 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 FEZF2Q8TBJ5 459 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 SLC5A5Q92911 643 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 CLPTM1LQ96KA5 538 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 HPS4Q9NQG7 708 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.22□□□□□ -1.41
VPS13B-203ENST00000358544 RABL2AQ9UBK7 228 aaPredicted RBP6.22□□□□□ -1.41
VPS13B-203ENST00000358544 BOLA2-SMG1P6H3BVE0 249 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 TRAP1Q12931 704 aaKnown RBP6.22□□□□□ -1.41
VPS13B-203ENST00000358544 PYDC2Q56P42 97 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 KRT74Q7RTS7 529 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 ATPAF2Q8N5M1 289 aa6.22□□□□□ -1.41
VPS13B-203ENST00000358544 ACTL9Q8TC94 416 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms