RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 PDXPQ96GD0 296 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 CNOT6LQ96LI5 555 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 COG8Q96MW5 612 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 MIPEPQ99797 713 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 USB1Q9BQ65 265 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 DCUN1D5Q9BTE7 237 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 CINPQ9BW66 212 aaPredicted RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 LSM14BQ9BX40 385 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PRDM8Q9NQV8 689 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PTTG3PQ9NZH4 202 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PSMC3IPQ9P2W1 217 aaPredicted RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 AGO2Q9UKV8 859 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TLR6Q9Y2C9 796 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 KDM3AQ9Y4C1 1321 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 PLCH2O75038 1416 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 ARAP3Q8WWN8 1544 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 TRAV6A0A075B6T7 132 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 PDZK1P1A8MUH7 402 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 M0R3G1 203 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 EML1O00423 815 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 KPNA3O00505 521 aaPredicted RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 E2F3O00716 465 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 ADAMTS4O75173 837 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 ALBP02768 609 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 TRIM49P0CI25 452 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 TRIM49CP0CI26 452 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 CKBP12277 381 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 CDH1P12830 882 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 GRIA2P42262 883 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 STT3AP46977 705 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 CSTF3Q12996 717 aaKnown RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 GRM1Q13255 1194 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 SFT2D3Q587I9 215 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 RAPH1Q70E73 1250 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 HERC6Q8IVU3 1022 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 OR8K5Q8NH50 307 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 ATP6V1E2Q96A05 226 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 TMEM246Q9BRR3 403 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 THTPAQ9BU02 230 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 CDCA7Q9BWT1 371 aaPredicted RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 GPN3Q9UHW5 284 aaPredicted RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 ADGRE2Q9UHX3 823 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 EVLQ9UI08 416 aaPredicted RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 ACSL5Q9ULC5 683 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 POLR2MP0CAP2 368 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 HOXC13P31276 330 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 HADHAP40939 763 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 HOXA1P49639 335 aaPredicted RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 DNA2P51530 1060 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 TRIM32Q13049 653 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 CLCA4Q14CN2 919 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 BRMS1LQ5PSV4 323 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 IRAK1BP1Q5VVH5 260 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 UGT3A1Q6NUS8 523 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 ABRAXAS1Q6UWZ7 409 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 NKAIN4Q8IVV8 208 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 SFRP1Q8N474 314 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 VPS39Q96JC1 886 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 VRTNQ9H8Y1 702 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 ZC3H7BQ9UGR2 993 aaKnown RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 MAFBQ9Y5Q3 323 aaPredicted RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 EXOC1LA0A1B0GW35 172 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 HEATR9A2RTY3 570 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 C19orf81C9J6K1 198 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 ATP6V1G2-DDX39BF2Z307 99 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 GMDSO60547 372 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 PRKD3O94806 890 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 CTDNEP1O95476 244 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 SERPINA6P08185 405 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 XRCC5P13010 732 aaKnown RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 ITGALP20701 1170 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 MFAP3P55082 362 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 GSTO1P78417 241 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 GFPT1Q06210 699 aaPredicted RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 MMRN1Q13201 1228 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 SLC12A1Q13621 1099 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 DLGAP5Q15398 846 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 PTPN21Q16825 1174 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 TXNRD1Q16881 649 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 AGAP6Q5VW22 663 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 SLC9A4Q6AI14 798 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 IYDQ6PHW0 289 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 AMIGO2Q86SJ2 522 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 FBXO11Q86XK2 927 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 PROM2Q8N271 834 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 C12orf50Q8NA57 414 aaPredicted RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 TMEM80Q96HE8 168 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 AGAP4Q96P64 663 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 C9orf16Q9BUW7 83 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 ZNF556Q9HAH1 456 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 CNNM1Q9NRU3 951 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 TXNDC16Q9P2K2 825 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 FARP1Q9Y4F1 1045 aaPredicted RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 SNX5Q9Y5X3 404 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 ARHGAP23Q9P227 1491 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 LRRC72A6NJI9 287 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 CCNDBP1O95273 360 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 TMEM253P0C7T8 217 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 BMP6P22004 513 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 157.1 ms