RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 IL18R1Q13478 541 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 NEK5Q6P3R8 708 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 ATL1Q8WXF7 558 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 C17orf80Q9BSJ5 609 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 CXorf21Q9HAI6 301 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 EIF3LQ9Y262 564 aaKnown RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 ITM2BQ9Y287 266 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 MEI4A8MW99 385 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 B8ZZF3 427 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 GOLGA8SH3BPF8 625 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 CHADO15335 359 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 COBLO75128 1261 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 CAPGP40121 348 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 PSMD5Q16401 504 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 KLHL17Q6TDP4 642 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 EIF3MQ7L2H7 374 aaKnown RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 ARMC8Q8IUR7 673 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 FBXO36Q8NEA4 188 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 IPCEF1Q8WWN9 437 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 TASP1Q9H6P5 420 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 SP140LQ9H930 580 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 QPCTLQ9NXS2 382 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 MAGEL2Q9UJ55 1249 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 HACD1B0YJ81 288 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 NMT2O60551 498 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 HUS1O60921 280 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 FAM153BP0C7A2 387 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 FDPSP14324 419 aaKnown RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 PHC1P78364 1004 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 PPARDQ03181 441 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF181Q2M3W8 571 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 FAM153CQ494X1 144 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 CCNYL2Q5T2Q4 361 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 PROSER1Q86XN7 944 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 TBC1D10CQ8IV04 446 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 SVOPLQ8N434 492 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 LSM14AQ8ND56 463 aaKnown RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 JDP2Q8WYK2 163 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 RHBDF1Q96CC6 855 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 EDC3Q96F86 508 aaKnown RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 NSMCE3Q96MG7 304 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 LRRC40Q9H9A6 602 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 TMEM216Q9P0N5 145 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 PTPRUQ92729 1446 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 TEX51A0A1B0GUA7 166 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 EML1O00423 815 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 KRT34O76011 436 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 C8BP07358 591 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 DNAJB1P25685 340 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 PTX3P26022 381 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 PSMB9P28065 219 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 CASP4P49662 377 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 OXCT1P55809 520 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 MARSP56192 900 aaKnown RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 LGALS3BPQ08380 585 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 DPH6Q7L8W6 267 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ARL10Q8N8L6 244 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 LRRN4CLQ8ND94 238 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF507Q8TCN5 953 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 FSD1LQ9BXM9 530 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ZC3H12CQ9C0D7 883 aaKnown RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 C6orf62Q9GZU0 229 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 CCSER2Q9H7U1 834 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF696Q9H7X3 374 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 PRDM8Q9NQV8 689 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ERVK-11Q9UQG0 969 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 STON1Q9Y6Q2 735 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 KDM6BO15054 1643 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 HECW2Q9P2P5 1572 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 RGSL1A5PLK6 1076 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ITGAVP06756 1048 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ACADSBP45954 432 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 KPNA1P52294 538 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 PTPROQ16827 1216 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 SBK1Q52WX2 424 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 OR6B2Q6IFH4 312 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 MPP5Q8N3R9 675 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 MCFD2Q8NI22 146 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 AGR3Q8TD06 166 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 SLCO2A1Q92959 643 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 KIFC1Q9BW19 673 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 PLA2G12BQ9BX93 195 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 FAM124BQ9H5Z6 455 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 RPS6KA6Q9UK32 745 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 LMTK3Q96Q04 1460 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 NADKO95544 446 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ZBTB11O95625 1053 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 RBP3P10745 1247 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 IL2RBP14784 551 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 SAT1P21673 171 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 GABRB2P47870 512 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 SNRNP48Q6IEG0 339 aaKnown RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 P2RY8Q86VZ1 359 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 MTMR8Q96EF0 704 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 KCTD14Q9BQ13 255 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 SNX7Q9UNH6 387 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 CEP152O94986 1710 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms