RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 SYNCRIPO60506 623 aaKnown RBP18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 SMC2O95347 1197 aa18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 LCP1P13796 627 aa18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 CSRP1P21291 193 aaKnown RBP18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 DPP6P42658 865 aa18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 PMS1P54277 932 aaKnown RBP18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 MFAP3P55082 362 aa18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 SHC2P98077 582 aa18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 ARID5AQ03989 594 aa18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 ADIGQ0VDE8 80 aa18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 CUL2Q13617 745 aa18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 SGO2Q562F6 1265 aa18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 ZNF658Q5TYW1 1059 aaPredicted RBP18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 FMNL3Q8IVF7 1028 aa18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 CEP76Q8TAP6 659 aa18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 RNF139Q8WU17 664 aa18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 UCMAQ8WVF2 138 aa18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 SMARCE1Q969G3 411 aa18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 UBXN6Q9BZV1 441 aa18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 PRDM16Q9HAZ2 1276 aa18.41■□□□□ 0.54
SHKBP1-223ENST00000600552 C1QTNF9BB2RNN3 333 aa18.4■□□□□ 0.54
SHKBP1-223ENST00000600552 PENKP01210 267 aaPredicted RBP18.4■□□□□ 0.54
SHKBP1-223ENST00000600552 SERPINF2P08697 491 aa18.4■□□□□ 0.54
SHKBP1-223ENST00000600552 C1QTNF9P0C862 333 aa18.4■□□□□ 0.54
SHKBP1-223ENST00000600552 IL12RB1P42701 662 aa18.4■□□□□ 0.54
SHKBP1-223ENST00000600552 RGS7P49802 495 aa18.4■□□□□ 0.54
SHKBP1-223ENST00000600552 PLEKHG6Q3KR16 790 aa18.4■□□□□ 0.54
SHKBP1-223ENST00000600552 FUT11Q495W5 492 aa18.4■□□□□ 0.54
SHKBP1-223ENST00000600552 FMR1NBQ8N0W7 255 aaPredicted RBP18.4■□□□□ 0.54
SHKBP1-223ENST00000600552 SIX6OS1Q8N1H7 587 aa18.4■□□□□ 0.54
SHKBP1-223ENST00000600552 ZNF276Q8N554 614 aa18.4■□□□□ 0.54
SHKBP1-223ENST00000600552 GPR174Q9BXC1 333 aa18.4■□□□□ 0.54
SHKBP1-223ENST00000600552 MIR1-1HGQ9H1L0 117 aa18.4■□□□□ 0.54
SHKBP1-223ENST00000600552 ARMCX3Q9UH62 379 aaPredicted RBP18.4■□□□□ 0.54
SHKBP1-223ENST00000600552 KMT2BQ9UMN6 2715 aaPredicted RBP18.4■□□□□ 0.54
SHKBP1-223ENST00000600552 MEI4A8MW99 385 aa18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 GFRA2O00451 464 aa18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 SLC16A3O15427 465 aaKnown RBP18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 OPHN1O60890 802 aa18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 CALCAP01258 141 aa18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 HARS2P49590 506 aaKnown RBP18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 BCAT1P54687 386 aa18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 YWHAEP62258 255 aaKnown RBP18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 SIM1P81133 766 aaPredicted RBP18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 FKBP3Q00688 224 aaKnown RBP18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 RAB41Q5JT25 222 aa18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 SYCP2LQ5T4T6 812 aa18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 ANKS1BQ7Z6G8 1248 aa18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 FAM124AQ86V42 546 aa18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 MINDY1Q8N5J2 469 aa18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 TOE1Q96GM8 510 aaKnown RBP18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 CD248Q9HCU0 757 aa18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 ELOVL2Q9NXB9 296 aa18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 THAP10Q9P2Z0 257 aaPredicted RBP18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 FBXO10Q9UK96 956 aa18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 PCDHB4Q9Y5E5 795 aa18.39■□□□□ 0.53
SHKBP1-223ENST00000600552 XPO1O14980 1071 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 MSI1O43347 362 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 EPHX1P07099 455 aa18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 CD6P30203 668 aa18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 BST2Q10589 180 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 ZNF234Q14588 700 aa18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 CCDC40Q4G0X9 1142 aa18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 BSPRYQ5W0U4 402 aa18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 KLHL10Q6JEL2 608 aa18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 TMEM270Q6UE05 265 aa18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 TMPRSS6Q8IU80 811 aa18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 PLD4Q96BZ4 506 aa18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 SIPA1Q96FS4 1042 aa18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 FAXDC2Q96IV6 333 aa18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 GSDMAQ96QA5 445 aa18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 SCNM1Q9BWG6 230 aa18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 SLC27A6Q9Y2P4 619 aa18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 PCNX2A6NKB5 2137 aa18.38■□□□□ 0.53
SHKBP1-223ENST00000600552 CACNA1EQ15878 2313 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 YJEFN3A6XGL0 299 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 E7ENQ6 273 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 ARHGAP33O14559 1287 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 SYPP08247 313 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 VDRP11473 427 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 HLA-EP13747 358 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 PRKCHP24723 683 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 HOXD12P35452 270 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 STIM1Q13586 685 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 WDR45BQ5MNZ6 344 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 PM20D1Q6GTS8 502 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 SERPINA13PQ6UXR4 307 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 UNQ6494/PRO21346Q6UXR6 183 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 RABEPKQ7Z6M1 372 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 ZNF366Q8N895 744 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 CYB5D2Q8WUJ1 264 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 PIWIL1Q96J94 861 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 MKRN2Q9H000 416 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 CAPN10Q9HC96 672 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 OLA1Q9NTK5 396 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 GTF3C3Q9Y5Q9 886 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 CEP295Q9C0D2 2601 aa18.37■□□□□ 0.53
SHKBP1-223ENST00000600552 HYAL3O43820 417 aaPredicted RBP18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 PROS1P07225 676 aa18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 ACADMP11310 421 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms