RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 SLC2A14Q8TDB8 520 aa13.4□□□□□ -0.26
SS18-219ENST00000581570 PIWIL1Q96J94 861 aaKnown RBP13.4□□□□□ -0.26
SS18-219ENST00000581570 TMX3Q96JJ7 454 aa13.4□□□□□ -0.26
SS18-219ENST00000581570 FCRL3Q96P31 734 aaPredicted RBP13.4□□□□□ -0.26
SS18-219ENST00000581570 CIPCQ9C0C6 399 aa13.4□□□□□ -0.26
SS18-219ENST00000581570 SDCBP2Q9H190 292 aa13.4□□□□□ -0.26
SS18-219ENST00000581570 LHX5Q9H2C1 402 aa13.4□□□□□ -0.26
SS18-219ENST00000581570 VRTNQ9H8Y1 702 aa13.4□□□□□ -0.26
SS18-219ENST00000581570 AGPAT3Q9NRZ7 376 aa13.4□□□□□ -0.26
SS18-219ENST00000581570 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.4□□□□□ -0.26
SS18-219ENST00000581570 SMC3Q9UQE7 1217 aa13.4□□□□□ -0.26
SS18-219ENST00000581570 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.4□□□□□ -0.26
SS18-219ENST00000581570 PCDHGA1Q9Y5H4 931 aa13.4□□□□□ -0.26
SS18-219ENST00000581570 ASH1LQ9NR48 2969 aaKnown RBP13.4□□□□□ -0.26
SS18-219ENST00000581570 TGFB1I1O43294 461 aa13.39□□□□□ -0.27
SS18-219ENST00000581570 KLKB1P03952 638 aa13.39□□□□□ -0.27
SS18-219ENST00000581570 CTSKP43235 329 aa13.39□□□□□ -0.27
SS18-219ENST00000581570 CLDN6P56747 220 aa13.39□□□□□ -0.27
SS18-219ENST00000581570 ARID5AQ03989 594 aa13.39□□□□□ -0.27
SS18-219ENST00000581570 EIF4HQ15056 248 aaKnown RBP13.39□□□□□ -0.27
SS18-219ENST00000581570 ZNF699Q32M78 642 aa13.39□□□□□ -0.27
SS18-219ENST00000581570 KCNT1Q5JUK3 1230 aa13.39□□□□□ -0.27
SS18-219ENST00000581570 SERPINA13PQ6UXR4 307 aa13.39□□□□□ -0.27
SS18-219ENST00000581570 GPRIN1Q7Z2K8 1008 aa13.39□□□□□ -0.27
SS18-219ENST00000581570 ADAT2Q7Z6V5 191 aaKnown RBP13.39□□□□□ -0.27
SS18-219ENST00000581570 XXYLT1Q8NBI6 393 aa13.39□□□□□ -0.27
SS18-219ENST00000581570 ZNF507Q8TCN5 953 aa13.39□□□□□ -0.27
SS18-219ENST00000581570 SORCS1Q8WY21 1168 aa13.39□□□□□ -0.27
SS18-219ENST00000581570 BIRC7Q96CA5 298 aa13.39□□□□□ -0.27
SS18-219ENST00000581570 A0A087X0B3 334 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 ENC1O14682 589 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 EIF3DO15371 548 aaKnown RBP eCLIP13.38□□□□□ -0.27
SS18-219ENST00000581570 PAPSS1O43252 624 aaPredicted RBP13.38□□□□□ -0.27
SS18-219ENST00000581570 TIMM44O43615 452 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 DFNA5O60443 496 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 TSPAN3O60637 253 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 FSBPO95073 299 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 SEMA4FO95754 770 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 CYBBP04839 570 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 FAM200BP0CF97 657 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 CD27P26842 260 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 ADORA2BP29275 332 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 BIRC3Q13489 604 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 CAMK2GQ13555 558 aaPredicted RBP13.38□□□□□ -0.27
SS18-219ENST00000581570 BMT2Q1RMZ1 405 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 GPR155Q7Z3F1 870 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 TADA2BQ86TJ2 420 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 CRYBG2Q8N1P7 616 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 C12orf29Q8N999 325 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 RBBP8NLQ8NC74 664 aaPredicted RBP13.38□□□□□ -0.27
SS18-219ENST00000581570 BAP1Q92560 729 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 JAKMIP2Q96AA8 810 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 ELMO3Q96BJ8 720 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 DCLK3Q9C098 648 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 BTBD1Q9H0C5 482 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 GZF1Q9H116 711 aaPredicted RBP13.38□□□□□ -0.27
SS18-219ENST00000581570 FAM49BQ9NUQ9 324 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 NAGPAQ9UK23 515 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 CLEC4EQ9ULY5 219 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 PCDHA5Q9Y5H7 936 aa13.38□□□□□ -0.27
SS18-219ENST00000581570 HELZ2Q9BYK8 2649 aaKnown RBP13.38□□□□□ -0.27
SS18-219ENST00000581570 GOLGA4Q13439 2230 aaKnown RBP13.37□□□□□ -0.27
SS18-219ENST00000581570 A0A1B0GTQ1 180 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 TEX51A0A1B0GUA7 166 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 HHLA1C9JL84 531 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 J3QKU1 62 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 RFPL3O75679 317 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 LDOC1O95751 146 aaPredicted RBP13.37□□□□□ -0.27
SS18-219ENST00000581570 HMBSP08397 361 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 C1SP09871 688 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 RALAP11233 206 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 CDK4P11802 303 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 CORO1AP31146 461 aaKnown RBP13.37□□□□□ -0.27
SS18-219ENST00000581570 CASP4P49662 377 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 NDST1P52848 882 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 C21orf59P57076 290 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 SNRPFP62306 86 aaKnown RBP13.37□□□□□ -0.27
SS18-219ENST00000581570 COG7P83436 770 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 CFHR1Q03591 330 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 TARDBPQ13148 414 aaKnown RBP eCLIP13.37□□□□□ -0.272e-8■■□□□ 13.7
SS18-219ENST00000581570 NCOA4Q13772 614 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 RTP5Q14D33 572 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 TMEM215Q68D42 235 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 EPM2AIP1Q7L775 607 aaPredicted RBP13.37□□□□□ -0.27
SS18-219ENST00000581570 GATAD2AQ86YP4 633 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 CNDP2Q96KP4 475 aaKnown RBP13.37□□□□□ -0.27
SS18-219ENST00000581570 SLC2A11Q9BYW1 496 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 LRRC27Q9C0I9 530 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 NRSN2Q9GZP1 204 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 RASAL2Q9UJF2 1139 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 SHROOM3Q8TF72 1996 aa13.37□□□□□ -0.27
SS18-219ENST00000581570 CAPN8A6NHC0 703 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 CYSRT1A8MQ03 144 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 CBX4O00257 560 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 ITGAVP06756 1048 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 P4HA1P13674 534 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 PSEN1P49768 467 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 AP3M2P53677 418 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 BCAT1P54687 386 aa13.36□□□□□ -0.27
SS18-219ENST00000581570 CEBPZQ03701 1054 aaKnown RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms