RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 PCDHGA4Q9Y5G9 962 aa17.16■□□□□ 0.34
VPS53-218ENST00000575207 SPG11Q96JI7 2443 aa17.15■□□□□ 0.34
VPS53-218ENST00000575207 CPLX1O14810 134 aa17.15■□□□□ 0.34
VPS53-218ENST00000575207 HCRTO43612 131 aa17.15■□□□□ 0.34
VPS53-218ENST00000575207 HUS1O60921 280 aa17.15■□□□□ 0.34
VPS53-218ENST00000575207 LHX1P48742 406 aa17.15■□□□□ 0.34
VPS53-218ENST00000575207 TUBP50607 506 aa17.15■□□□□ 0.34
VPS53-218ENST00000575207 TGIF1Q15583 401 aa17.15■□□□□ 0.34
VPS53-218ENST00000575207 ECM1Q16610 540 aa17.15■□□□□ 0.34
VPS53-218ENST00000575207 HECTD3Q5T447 861 aa17.15■□□□□ 0.34
VPS53-218ENST00000575207 SNX30Q5VWJ9 437 aa17.15■□□□□ 0.34
VPS53-218ENST00000575207 SPATS2Q86XZ4 545 aaKnown RBP17.15■□□□□ 0.34
VPS53-218ENST00000575207 PDZD8Q8NEN9 1154 aa17.15■□□□□ 0.34
VPS53-218ENST00000575207 WDR36Q8NI36 951 aaKnown RBP17.15■□□□□ 0.34
VPS53-218ENST00000575207 HTR3CQ8WXA8 447 aa17.15■□□□□ 0.34
VPS53-218ENST00000575207 OVCA2Q8WZ82 227 aa17.15■□□□□ 0.34
VPS53-218ENST00000575207 MYLPFQ96A32 169 aa17.15■□□□□ 0.34
VPS53-218ENST00000575207 C8orf48Q96LL4 319 aa17.15■□□□□ 0.34
VPS53-218ENST00000575207 ELOVL2Q9NXB9 296 aa17.15■□□□□ 0.34
VPS53-218ENST00000575207 COL27A1Q8IZC6 1860 aaPredicted RBP17.15■□□□□ 0.34
VPS53-218ENST00000575207 ZFC3H1O60293 1989 aaKnown RBP17.15■□□□□ 0.34
VPS53-218ENST00000575207 APCP25054 2843 aa17.14■□□□□ 0.33
VPS53-218ENST00000575207 WNT7AO00755 349 aa17.14■□□□□ 0.33
VPS53-218ENST00000575207 FHL5Q5TD97 284 aa17.14■□□□□ 0.33
VPS53-218ENST00000575207 SERPINA13PQ6UXR4 307 aa17.14■□□□□ 0.33
VPS53-218ENST00000575207 TNFRSF25Q93038 417 aa17.14■□□□□ 0.33
VPS53-218ENST00000575207 P2RY11Q96G91 374 aa17.14■□□□□ 0.33
VPS53-218ENST00000575207 OSBPL2Q9H1P3 480 aa17.14■□□□□ 0.33
VPS53-218ENST00000575207 TMEM60Q9H2L4 133 aa17.14■□□□□ 0.33
VPS53-218ENST00000575207 WDR70Q9NW82 654 aa17.14■□□□□ 0.33
VPS53-218ENST00000575207 PCDHGA7Q9Y5G6 932 aa17.14■□□□□ 0.33
VPS53-218ENST00000575207 AKAP9Q99996 3911 aa17.14■□□□□ 0.33
VPS53-218ENST00000575207 A0A0B4J269 797 aa17.13■□□□□ 0.33
VPS53-218ENST00000575207 A1L4Q6 167 aa17.13■□□□□ 0.33
VPS53-218ENST00000575207 F8VP50 259 aa17.13■□□□□ 0.33
VPS53-218ENST00000575207 ATP2C2O75185 946 aa17.13■□□□□ 0.33
VPS53-218ENST00000575207 DNTTP04053 509 aa17.13■□□□□ 0.33
VPS53-218ENST00000575207 IRF1P10914 325 aa17.13■□□□□ 0.33
VPS53-218ENST00000575207 COL8A1P27658 744 aa17.13■□□□□ 0.33
VPS53-218ENST00000575207 RPS14P62263 151 aaKnown RBP17.13■□□□□ 0.33
VPS53-218ENST00000575207 KCNJ12Q14500 433 aa17.13■□□□□ 0.33
VPS53-218ENST00000575207 EIF4HQ15056 248 aaKnown RBP17.13■□□□□ 0.33
VPS53-218ENST00000575207 SLC45A4Q5BKX6 768 aa17.13■□□□□ 0.33
VPS53-218ENST00000575207 KCNN1Q92952 543 aa17.13■□□□□ 0.33
VPS53-218ENST00000575207 CCSER2Q9H7U1 834 aa17.13■□□□□ 0.33
VPS53-218ENST00000575207 FBRSQ9HAH7 460 aa17.13■□□□□ 0.33
VPS53-218ENST00000575207 PLK2Q9NYY3 685 aa17.13■□□□□ 0.33
VPS53-218ENST00000575207 A0A1B0GTL3 188 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 SFI1A8K8P3 1242 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 SDC3O75056 442 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 RNF224P0DH78 156 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 XBP1P17861 261 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 SMTNP53814 917 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 GALCP54803 685 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 CYP4F2P78329 520 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 NR5A1Q13285 461 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 KCNAB2Q13303 367 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 MAPRE1Q15691 268 aaKnown RBP17.12■□□□□ 0.33
VPS53-218ENST00000575207 TTC31Q49AM3 519 aaPredicted RBP17.12■□□□□ 0.33
VPS53-218ENST00000575207 HS1BP3Q53T59 392 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 HAUS3Q68CZ6 603 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 TMC6Q7Z403 805 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 C14orf80Q86SX3 495 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 ZSCAN1Q8NBB4 408 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 MAPK15Q8TD08 544 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 BICD1Q96G01 975 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 POM121Q96HA1 1249 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 PIWIL1Q96J94 861 aaKnown RBP17.12■□□□□ 0.33
VPS53-218ENST00000575207 CRTAC1Q9NQ79 661 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 GJB4Q9NTQ9 266 aa17.12■□□□□ 0.33
VPS53-218ENST00000575207 CUEDC1Q9NWM3 386 aaPredicted RBP17.12■□□□□ 0.33
VPS53-218ENST00000575207 LY6G6EA0A0G2JKS1 128 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 FAM47DPA6NHR8 397 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 PENKP01210 267 aaPredicted RBP17.11■□□□□ 0.33
VPS53-218ENST00000575207 GIMD1P0DJR0 217 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 TGM2P21980 687 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 HARS2P49590 506 aaKnown RBP17.11■□□□□ 0.33
VPS53-218ENST00000575207 LIG4P49917 911 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 C1QL3Q5VWW1 255 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 FOXR1Q6PIV2 292 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 C1orf186Q6ZWK4 172 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 USP30Q70CQ3 517 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 TOP6BLQ8N6T0 577 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 MFSD2AQ8NA29 543 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 BHMTQ93088 406 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 SYT15Q9BQS2 421 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 RUSC1Q9BVN2 902 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 TMEM245Q9H330 911 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 USP29Q9HBJ7 922 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 GDAP2Q9NXN4 497 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 ORC3Q9UBD5 711 aaPredicted RBP17.11■□□□□ 0.33
VPS53-218ENST00000575207 U3KQA8 63 aa17.11■□□□□ 0.33
VPS53-218ENST00000575207 WIPF3A6NGB9 483 aa17.1■□□□□ 0.33
VPS53-218ENST00000575207 PIGRP01833 764 aa17.1■□□□□ 0.33
VPS53-218ENST00000575207 PLS3P13797 630 aa17.1■□□□□ 0.33
VPS53-218ENST00000575207 YWHAQP27348 245 aa17.1■□□□□ 0.33
VPS53-218ENST00000575207 SLC5A2P31639 672 aa17.1■□□□□ 0.33
VPS53-218ENST00000575207 RINT1Q6NUQ1 792 aa17.1■□□□□ 0.33
VPS53-218ENST00000575207 NCEH1Q6PIU2 408 aa17.1■□□□□ 0.33
VPS53-218ENST00000575207 BLOC1S2Q6QNY1 142 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms