RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 EPB41P11171 864 aaKnown RBP12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 KRT10P13645 584 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 GNSP15586 552 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 MATKP42679 507 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 ENPEPQ07075 957 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 TMEM132DQ14C87 1099 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 NFE2Q16621 373 aaPredicted RBP12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 CFAP221Q4G0U5 840 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 CCDC40Q4G0X9 1142 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 FIGNQ5HY92 759 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 MIIPQ5JXC2 388 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 WDR45BQ5MNZ6 344 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 FKBP15Q5T1M5 1219 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 C10orf76Q5T2E6 689 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 CNGA4Q8IV77 575 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 TRIM59Q8IWR1 403 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 LRRC8AQ8IWT6 810 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 TERB1Q8NA31 727 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 SNIP1Q8TAD8 396 aaKnown RBP12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 CXorf38Q8TB03 319 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 KCNV2Q8TDN2 545 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 P2RY11Q96G91 374 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 TOE1Q96GM8 510 aaKnown RBP12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 AGPAT3Q9NRZ7 376 aa12.59□□□□□ -0.39
VPS9D1-207ENST00000568691 KCNK3O14649 394 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 CAPN9O14815 690 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 HOXC11O43248 304 aaPredicted RBP12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 TGFB1I1O43294 461 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 ATP2C2O75185 946 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 CD6P30203 668 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 MATR3P43243 847 aaKnown RBP eCLIP12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 KCNC4Q03721 635 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 UBXN1Q04323 297 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 ADAM9Q13443 819 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 VWA3BQ502W6 1294 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 CCDC157Q569K6 752 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 KCNT1Q5JUK3 1230 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 SYCP2LQ5T4T6 812 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 TMPRSS12Q86WS5 348 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 TMEM25Q86YD3 366 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 SCN4BQ8IWT1 228 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 FOXJ1Q92949 421 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 PANX2Q96RD6 677 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 ACBD6Q9BR61 282 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 NUP58Q9BVL2 599 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 TTLL2Q9BWV7 592 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 VPS16Q9H269 839 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 IKZF4Q9H2S9 585 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 KCNF1Q9H3M0 494 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 NDST4Q9H3R1 872 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 TMEM30AQ9NV96 361 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 DMAC2Q9NW81 257 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 DPP3Q9NY33 737 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 USP36Q9P275 1121 aaKnown RBP12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 DERAQ9Y315 318 aa12.58□□□□□ -0.4
VPS9D1-207ENST00000568691 B8ZZF3 427 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 ANKRD63C9JTQ0 380 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 ERVH48-1M5A8F1 160 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 CBX4O00257 560 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 KIAA0391O15091 583 aaKnown RBP12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 BCAT2O15382 392 aaPredicted RBP12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 TEX33O43247 280 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 ZNF500O60304 480 aaPredicted RBP12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 NDUFS2O75306 463 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 WISP1O95388 367 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 CER1O95813 267 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 ADH1CP00326 375 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 NCAM1P13591 858 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 CSNK1EP49674 416 aaKnown RBP12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 ACOT2P49753 483 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 TSPY1Q01534 308 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 RTP5Q14D33 572 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 KIF19Q2TAC6 998 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 DCAF12L1Q5VU92 463 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 FAM171BQ6P995 826 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 CRELD2Q6UXH1 353 aaPredicted RBP12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 SPACA3Q8IXA5 215 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 SYCP3Q8IZU3 236 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 CACTINQ8WUQ7 758 aaKnown RBP12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 NXPE2Q96DL1 559 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 GPR174Q9BXC1 333 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 NAA15Q9BXJ9 866 aaKnown RBP12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 MKRN2Q9H000 416 aaKnown RBP12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 MIR1-1HGQ9H1L0 117 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 DDX43Q9NXZ2 648 aaKnown RBP12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 ARMCX3Q9UH62 379 aaPredicted RBP12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 FRMD4BQ9Y2L6 1034 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 C2CD2Q9Y426 696 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 DAAM1Q9Y4D1 1078 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 SNX11Q9Y5W9 270 aa12.57□□□□□ -0.4
VPS9D1-207ENST00000568691 A0A1W2PQJ5 194 aa12.56□□□□□ -0.4
VPS9D1-207ENST00000568691 GTPBP10A4D1E9 387 aaKnown RBP12.56□□□□□ -0.4
VPS9D1-207ENST00000568691 METTL12A8MUP2 240 aa12.56□□□□□ -0.4
VPS9D1-207ENST00000568691 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.56□□□□□ -0.4
VPS9D1-207ENST00000568691 SLC9A3R1O14745 358 aaPredicted RBP12.56□□□□□ -0.4
VPS9D1-207ENST00000568691 GABRDO14764 452 aa12.56□□□□□ -0.4
VPS9D1-207ENST00000568691 MFAP3LO75121 409 aa12.56□□□□□ -0.4
VPS9D1-207ENST00000568691 PFKLP17858 780 aa12.56□□□□□ -0.4
VPS9D1-207ENST00000568691 FECHP22830 423 aa12.56□□□□□ -0.4
VPS9D1-207ENST00000568691 PSMC2P35998 433 aaKnown RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms