RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 ADAMTS9Q9P2N4 1935 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 ASCC3Q8N3C0 2202 aaKnown RBP11.32□□□□□ -0.6
VPS39-208ENST00000564994 ACACBO00763 2458 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 WASH3PC4AMC7 463 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 M0QYV0 167 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 TM4SF5O14894 197 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 CAVIN2O95810 425 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 AFPP02771 609 aaKnown RBP11.32□□□□□ -0.6
VPS39-208ENST00000564994 CHKAP35790 457 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 LIMK1P53667 647 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 MFAP3P55082 362 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 GCNT1Q02742 428 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 CETN1Q12798 172 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 GEN1Q17RS7 908 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 C11orf74Q86VG3 221 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 CHPFQ8IZ52 775 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 SIX6OS1Q8N1H7 587 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 SCML4Q8N228 414 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 PGBD3Q8N328 593 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 CPXM2Q8N436 756 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 TRIML1Q8N9V2 468 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 IPO4Q8TEX9 1081 aaKnown RBP11.32□□□□□ -0.6
VPS39-208ENST00000564994 CLEC4CQ8WTT0 213 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 PLD4Q96BZ4 506 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 INTS2Q9H0H0 1204 aaKnown RBP11.32□□□□□ -0.6
VPS39-208ENST00000564994 OLA1Q9NTK5 396 aaKnown RBP11.32□□□□□ -0.6
VPS39-208ENST00000564994 CACNA2D2Q9NY47 1150 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 CALCOCO1Q9P1Z2 691 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 CNTN6Q9UQ52 1028 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 SLC27A6Q9Y2P4 619 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 RAD54BQ9Y620 910 aa11.32□□□□□ -0.6
VPS39-208ENST00000564994 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.31□□□□□ -0.6
VPS39-208ENST00000564994 PATE3B3GLJ2 98 aa11.31□□□□□ -0.6
VPS39-208ENST00000564994 GFRA2O00451 464 aa11.31□□□□□ -0.6
VPS39-208ENST00000564994 MSI1O43347 362 aaKnown RBP11.31□□□□□ -0.6
VPS39-208ENST00000564994 PTGER3P43115 390 aa11.31□□□□□ -0.6
VPS39-208ENST00000564994 DHPSP49366 369 aaPredicted RBP11.31□□□□□ -0.6
VPS39-208ENST00000564994 STPG1Q5TH74 334 aa11.31□□□□□ -0.6
VPS39-208ENST00000564994 MSANTD2Q6P1R3 559 aa11.31□□□□□ -0.6
VPS39-208ENST00000564994 GJB7Q6PEY0 223 aa11.31□□□□□ -0.6
VPS39-208ENST00000564994 IRF2BP1Q8IU81 584 aa11.31□□□□□ -0.6
VPS39-208ENST00000564994 TMEFF1Q8IYR6 380 aa11.31□□□□□ -0.6
VPS39-208ENST00000564994 RNF139Q8WU17 664 aa11.31□□□□□ -0.6
VPS39-208ENST00000564994 PIWIL1Q96J94 861 aaKnown RBP11.31□□□□□ -0.6
VPS39-208ENST00000564994 CRACR2AQ9BSW2 395 aa11.31□□□□□ -0.6
VPS39-208ENST00000564994 SLC6A17Q9H1V8 727 aa11.31□□□□□ -0.6
VPS39-208ENST00000564994 CD93Q9NPY3 652 aa11.31□□□□□ -0.6
VPS39-208ENST00000564994 ABCC13Q9NSE7 274 aa11.31□□□□□ -0.6
VPS39-208ENST00000564994 CHMP5Q9NZZ3 219 aa11.31□□□□□ -0.6
VPS39-208ENST00000564994 RWDD2AQ9UIY3 292 aa11.31□□□□□ -0.6
VPS39-208ENST00000564994 HBS1LQ9Y450 684 aaKnown RBP11.31□□□□□ -0.6
VPS39-208ENST00000564994 MUC22E2RYF6 1773 aaPredicted RBP11.31□□□□□ -0.6
VPS39-208ENST00000564994 LNP1A1A4G5 178 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 TSPAN3O60637 253 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 IGLV3-27P01718 113 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 FYNP06241 537 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 NDUFV2P19404 249 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 SLC9A1P19634 815 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 HOXD9P28356 352 aaPredicted RBP11.3□□□□□ -0.6
VPS39-208ENST00000564994 GPD2P43304 727 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 RPL34P49207 117 aaKnown RBP11.3□□□□□ -0.6
VPS39-208ENST00000564994 SGSHP51688 502 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 APBA1Q02410 837 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 STILQ15468 1287 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 PPM1JQ5JR12 505 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 TMEM215Q68D42 235 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 DENND1BQ6P3S1 775 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 ARMCX6Q7L4S7 300 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 LPCAT2Q7L5N7 544 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 CYP2U1Q7Z449 544 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 DDI1Q8WTU0 396 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 IRGQQ8WZA9 623 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 PIGKQ92643 395 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 SPACA7Q96KW9 195 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 HSFY1Q96LI6 401 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 MIS12Q9H081 205 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 UBE2TQ9NPD8 197 aaPredicted RBP11.3□□□□□ -0.6
VPS39-208ENST00000564994 ACP6Q9NPH0 428 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 TMEM74BQ9NUR3 256 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 STOML2Q9UJZ1 356 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 STON1Q9Y6Q2 735 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 EPG5Q9HCE0 2579 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 CACNA1EQ15878 2313 aa11.3□□□□□ -0.6
VPS39-208ENST00000564994 CEP295Q9C0D2 2601 aa11.29□□□□□ -0.6
VPS39-208ENST00000564994 NUMA1Q14980 2115 aa11.29□□□□□ -0.6
VPS39-208ENST00000564994 IGHV1OR15-9A0A0B4J2B8 117 aa11.29□□□□□ -0.6
VPS39-208ENST00000564994 BECN2A8MW95 431 aa11.29□□□□□ -0.6
VPS39-208ENST00000564994 MAP3K13O43283 966 aa11.29□□□□□ -0.6
VPS39-208ENST00000564994 FGFR1OPO95684 399 aaKnown RBP11.29□□□□□ -0.6
VPS39-208ENST00000564994 LTFP02788 710 aa11.29□□□□□ -0.6
VPS39-208ENST00000564994 CYBBP04839 570 aa11.29□□□□□ -0.6
VPS39-208ENST00000564994 ADRB1P08588 477 aa11.29□□□□□ -0.6
VPS39-208ENST00000564994 KRT5P13647 590 aa11.29□□□□□ -0.6
VPS39-208ENST00000564994 IL12RB1P42701 662 aa11.29□□□□□ -0.6
VPS39-208ENST00000564994 HARS2P49590 506 aaKnown RBP11.29□□□□□ -0.6
VPS39-208ENST00000564994 IRX4P78413 519 aa11.29□□□□□ -0.6
VPS39-208ENST00000564994 ENPP2Q13822 863 aa11.29□□□□□ -0.6
VPS39-208ENST00000564994 ADGRF1Q5T601 910 aa11.29□□□□□ -0.6
VPS39-208ENST00000564994 RNF43Q68DV7 783 aa11.29□□□□□ -0.6
VPS39-208ENST00000564994 IL31Q6EBC2 164 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms