RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.54□□□□□ -0.88
VPS39-205ENST00000562258 GRID2IPA4D2P6 1211 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 H3BQ06 376 aaPredicted RBP9.54□□□□□ -0.88
VPS39-205ENST00000562258 GOLGA8RI6L899 631 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 GPR32O75388 356 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 DDHD2O94830 711 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 VNN1O95497 513 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 CTGFP29279 349 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 HOXD13P35453 343 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 MAMLD1Q13495 774 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 MOGSQ13724 837 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 TTC23LQ6PF05 361 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 FAM124AQ86V42 546 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 CHMP6Q96FZ7 201 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 EGFL8Q99944 293 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 XPO7Q9UIA9 1087 aaKnown RBP9.54□□□□□ -0.88
VPS39-205ENST00000562258 INTUQ9ULD6 942 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 PCDHB8Q9UN66 801 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 SHOC2Q9UQ13 582 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 CPQQ9Y646 472 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 ANKRD36CQ5JPF3 1778 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 BRWD1Q9NSI6 2320 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 TULP2O00295 520 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 BUD23O43709 281 aaKnown RBP9.54□□□□□ -0.88
VPS39-205ENST00000562258 PYGMP11217 842 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 PTPN2P17706 415 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 POLR2EP19388 210 aaKnown RBP9.54□□□□□ -0.88
VPS39-205ENST00000562258 CDC25CP30307 473 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 GPR15P49685 360 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 CREMQ03060 361 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 SPOCD1Q6ZMY3 1216 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 IRF2BP2Q7Z5L9 587 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 PDZD8Q8NEN9 1154 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 FBF1Q8TES7 1133 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 ZNF669Q96BR6 464 aaPredicted RBP9.54□□□□□ -0.88
VPS39-205ENST00000562258 CDK5RAP1Q96SZ6 601 aaKnown RBP9.54□□□□□ -0.88
VPS39-205ENST00000562258 RBM15Q96T37 977 aaKnown RBP eCLIP9.54□□□□□ -0.88
VPS39-205ENST00000562258 CARD9Q9H257 536 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 PRDM12Q9H4Q4 367 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.54□□□□□ -0.88
VPS39-205ENST00000562258 PHF24Q9UPV7 400 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 RWDD3Q9Y3V2 267 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 TTC28Q96AY4 2481 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 IGKV6D-21A0A0A0MT36 114 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 YJEFN3A6XGL0 299 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 E7ENQ6 273 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 F8W810 466 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 IL1BP01584 269 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 ATP5BP06576 529 aaKnown RBP9.53□□□□□ -0.88
VPS39-205ENST00000562258 PAPOLAP51003 745 aaKnown RBP9.53□□□□□ -0.88
VPS39-205ENST00000562258 SPARCL1Q14515 664 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 MAP7D1Q3KQU3 841 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 ALS2CLQ60I27 953 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 CLEC4CQ8WTT0 213 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 CYP2S1Q96SQ9 504 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 CCDC195A0A1B0GUA6 201 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 SIGLEC16A6NMB1 481 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 RFXAPO00287 272 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 XPO1O14980 1071 aaKnown RBP9.53□□□□□ -0.88
VPS39-205ENST00000562258 NDUFS3O75489 264 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 RFPL2O75678 378 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 SYF2O95926 243 aaKnown RBP9.53□□□□□ -0.88
VPS39-205ENST00000562258 PLA2G4AP47712 749 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 LCLAT1Q6UWP7 414 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 PRR23CQ6ZRP0 262 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 ZDHHC17Q8IUH5 632 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 REXO1L1PQ8IX06 675 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 IGSF21Q96ID5 467 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 SNRNP25Q9BV90 132 aaKnown RBP9.53□□□□□ -0.88
VPS39-205ENST00000562258 DCLK3Q9C098 648 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 ZC3H7BQ9UGR2 993 aaKnown RBP9.53□□□□□ -0.88
VPS39-205ENST00000562258 COL4A1P02462 1669 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 PTPRJQ12913 1337 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 C9IYK1 514 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 SLC9A3R1O14745 358 aaPredicted RBP9.53□□□□□ -0.88
VPS39-205ENST00000562258 CAND2O75155 1236 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 ERBB2P04626 1255 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 CYP3A5P20815 502 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 MARSP56192 900 aaKnown RBP9.53□□□□□ -0.88
VPS39-205ENST00000562258 MAXP61244 160 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 PDK2Q15119 407 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 FAM182AQ5T1J6 154 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 NT5DC3Q86UY8 548 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 SRRM1Q8IYB3 904 aaKnown RBP9.53□□□□□ -0.88
VPS39-205ENST00000562258 NOA1Q8NC60 698 aaKnown RBP9.53□□□□□ -0.88
VPS39-205ENST00000562258 SMG8Q8ND04 991 aaKnown RBP9.53□□□□□ -0.88
VPS39-205ENST00000562258 VCPIP1Q96JH7 1222 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 MIR1-1HGQ9H1L0 117 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 NOVA2Q9UNW9 492 aaKnown RBP9.53□□□□□ -0.88
VPS39-205ENST00000562258 FAM50BQ9Y247 325 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 ZNF263O14978 683 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 KRT37O76014 449 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 PFKMP08237 780 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 GOT1P17174 413 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 TYK2P29597 1187 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 KYNUQ16719 465 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 MARCH8Q5T0T0 291 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 C6orf118Q5T5N4 469 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 CDCA2Q69YH5 1023 aaPredicted RBP9.53□□□□□ -0.88
VPS39-205ENST00000562258 CROCCP2Q86T23 111 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms