RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 CRTAMO95727 393 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 BGNP21810 368 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 STIP1P31948 543 aaKnown RBP13.74□□□□□ -0.21
CLK3-206ENST00000562078 NEK2P51955 445 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 NR1H2P55055 460 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 PDAP1Q13442 181 aaKnown RBP13.74□□□□□ -0.21
CLK3-206ENST00000562078 CCDC153Q494R4 210 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 RALGPS1Q5JS13 557 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 FAM91A1Q658Y4 838 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 KRT39Q6A163 491 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 RGMBQ6NW40 437 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 RELL1Q8IUW5 271 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 GPD1LQ8N335 351 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 LZTR1Q8N653 840 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 FBXL18Q96ME1 805 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 KREMEN1Q96MU8 473 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 PTPN18Q99952 460 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 FAM213AQ9BRX8 229 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 ZNF696Q9H7X3 374 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 TMEM8AQ9HCN3 771 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 GIT1Q9Y2X7 761 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 MAFBQ9Y5Q3 323 aaPredicted RBP13.74□□□□□ -0.21
CLK3-206ENST00000562078 NOX1Q9Y5S8 564 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 PRR5-ARHGAP8B1AHC4 643 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 ATG7O95352 703 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 SLC5A3P53794 718 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 ALDH18A1P54886 795 aaKnown RBP13.74□□□□□ -0.21
CLK3-206ENST00000562078 ARHGAP8P85298 464 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 PDIA2Q13087 525 aaKnown RBP13.74□□□□□ -0.21
CLK3-206ENST00000562078 PSMD6Q15008 389 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 PRKD1Q15139 912 aaPredicted RBP13.74□□□□□ -0.21
CLK3-206ENST00000562078 BRDTQ58F21 947 aaPredicted RBP13.74□□□□□ -0.21
CLK3-206ENST00000562078 DEPDC1Q5TB30 811 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 ITPRIPL1Q6GPH6 555 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 DHRS4L2Q6PKH6 230 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 AHI1Q8N157 1196 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 SHCBP1Q8NEM2 672 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 TAS1R2Q8TE23 839 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 MFSD14AQ96MC6 490 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 GPATCH1Q9BRR8 931 aaKnown RBP13.74□□□□□ -0.21
CLK3-206ENST00000562078 NDEL1Q9GZM8 345 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 VPS11Q9H270 941 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 MGAMO43451 1857 aa13.74□□□□□ -0.21
CLK3-206ENST00000562078 LRRIQ4A6NIV6 560 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 PMM2O15305 246 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 FARP2O94887 1054 aaPredicted RBP13.73□□□□□ -0.21
CLK3-206ENST00000562078 TGDSO95455 350 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 CPOXP36551 454 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 LIG4P49917 911 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 GPC5P78333 572 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 PDK1Q15118 436 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 C16orf87Q6PH81 154 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 LPCAT2Q7L5N7 544 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 EFCAB3Q8N7B9 438 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 PSPC1Q8WXF1 523 aaKnown RBP13.73□□□□□ -0.21
CLK3-206ENST00000562078 STARD8Q92502 1023 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 ZMAT2Q96NC0 199 aaKnown RBP13.73□□□□□ -0.21
CLK3-206ENST00000562078 NUP85Q9BW27 656 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 ATAD3AQ9NVI7 634 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 ABT1Q9ULW3 272 aaKnown RBP13.73□□□□□ -0.21
CLK3-206ENST00000562078 AP4B1Q9Y6B7 739 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 SGPL1O95470 568 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 GARTP22102 1010 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 EDNRBP24530 442 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 ALDH1A3P47895 512 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 ATP1A4Q13733 1029 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 UBAP2LQ14157 1087 aaKnown RBP13.73□□□□□ -0.21
CLK3-206ENST00000562078 CYTH1Q15438 398 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 CNGA3Q16281 694 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 OGFOD2Q6N063 350 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 IFNLR1Q8IU57 520 aaPredicted RBP13.73□□□□□ -0.21
CLK3-206ENST00000562078 CPNE9Q8IYJ1 553 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 CENPSQ8N2Z9 138 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 FBXL13Q8NEE6 735 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 TMC2Q8TDI7 906 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 EPS8L1Q8TE68 723 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 DDI1Q8WTU0 396 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 TTC17Q96AE7 1141 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 BIRC8Q96P09 236 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 DCLK3Q9C098 648 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 DHX33Q9H6R0 707 aaKnown RBP13.73□□□□□ -0.21
CLK3-206ENST00000562078 TBC1D23Q9NUY8 699 aa13.73□□□□□ -0.21
CLK3-206ENST00000562078 PSMC3IPQ9P2W1 217 aaPredicted RBP13.73□□□□□ -0.21
CLK3-206ENST00000562078 MANSC4A6NHS7 340 aaPredicted RBP13.72□□□□□ -0.21
CLK3-206ENST00000562078 H0YCG3 227 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 CASQ2O14958 399 aaPredicted RBP13.72□□□□□ -0.21
CLK3-206ENST00000562078 GLRA2P23416 452 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 CDK9P50750 372 aaKnown RBP13.72□□□□□ -0.21
CLK3-206ENST00000562078 INAQ16352 499 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 OGFRL1Q5TC84 451 aaPredicted RBP13.72□□□□□ -0.21
CLK3-206ENST00000562078 SYDE1Q6ZW31 735 aaPredicted RBP13.72□□□□□ -0.21
CLK3-206ENST00000562078 NOP9Q86U38 636 aaKnown RBP13.72□□□□□ -0.21
CLK3-206ENST00000562078 ZCCHC9Q8N567 271 aaKnown RBP13.72□□□□□ -0.21
CLK3-206ENST00000562078 RAB3IL1Q8TBN0 382 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 SLC7A3Q8WY07 619 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 VTI1AQ96AJ9 217 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 PCYT2Q99447 389 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 PLVAPQ9BX97 442 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 PAIP1Q9H074 479 aaKnown RBP13.72□□□□□ -0.21
CLK3-206ENST00000562078 SSX2IPQ9Y2D8 614 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms