RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	GPT	P24298	496 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	MCM3	P25205	808 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	EEF1G	P26641	437 aa	Known RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	TNFRSF8	P28908	595 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CASP1	P29466	404 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	HOXA7	P31268	230 aa	Predicted RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	HNRNPH3	P31942	346 aa	Known RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CASP14	P31944	242 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	ACTN2	P35609	894 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	LONP1	P36776	959 aa	Known RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	PRPH	P41219	470 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	PPP1R2	P41236	205 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	EIF5	P55010	431 aa	Known RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	RAP2B	P61225	183 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	VSNL1	P62760	191 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CDK17	Q00537	523 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CHRND	Q07001	517 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CKAP4	Q07065	602 aa	Known RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	ORC2	Q13416	577 aa	Predicted RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	KCNJ12	Q14500	433 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CASP8	Q14790	479 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	SF3B3	Q15393	1217 aa	Known RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	ZSCAN26	Q16670	478 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	PTPN21	Q16825	1174 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	PFKFB3	Q16875	520 aa	Predicted RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	KRTAP27-1	Q3LI81	207 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	ZNF260	Q3ZCT1	412 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	MAP9	Q49MG5	647 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CCDC152	Q4G0S7	254 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	FILIP1L	Q4L180	1135 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	SBK1	Q52WX2	424 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	SLC44A4	Q53GD3	710 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	NAALADL2	Q58DX5	795 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	HSP90AA4P	Q58FG1	418 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	TCP11X2	Q5H9J9	407 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	ZNF569	Q5MCW4	686 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	ZNF658	Q5TYW1	1059 aa	Predicted RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	TTI2	Q6NXR4	508 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	ADGRA1	Q86SQ6	560 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	SRL	Q86TD4	932 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	PEG10	Q86TG7	708 aa	Known RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CTAGE6	Q86UF2	777 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CTAGE4	Q8IX94	777 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	ADSSL1	Q8N142	457 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	PDILT	Q8N807	584 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	C4orf32	Q8N8J7	132 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	NOA1	Q8NC60	698 aa	Known RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CTCFL	Q8NI51	663 aa	Predicted RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	NOC3L	Q8WTT2	800 aa	Known RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	TFAP2B	Q92481	460 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	EPSTI1	Q96J88	318 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	ERGIC2	Q96RQ1	377 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	UBAC1	Q9BSL1	405 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CCSER1	Q9C0I3	900 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	WNT8A	Q9H1J5	351 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CUEDC2	Q9H467	287 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	EBF3	Q9H4W6	596 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	THAP9	Q9H5L6	903 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	HAUS4	Q9H6D7	363 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	ZMAT4	Q9H898	229 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	SH3GLB2	Q9NR46	395 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	RMND1	Q9NWS8	449 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	ELOVL5	Q9NYP7	299 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CWC15	Q9P013	229 aa	Known RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	SIRPG	Q9P1W8	387 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	FEZ2	Q9UHY8	353 aa	Predicted RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	PRSS50	Q9UI38	385 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	ADAM21	Q9UKJ8	722 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	PADI4	Q9UM07	663 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	HPCAL4	Q9UM19	191 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	SLC4A4	Q9Y6R1	1079 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	WDR81	Q562E7	1941 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	ATP8B3	O60423	1300 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	RPTOR	Q8N122	1335 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	CCDC187	A0A096LP49	1063 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	TTC26	A0AVF1	554 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	PRSS38	A1L453	326 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	LRRIQ3	A6PVS8	624 aa	Predicted RBP	2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	EIF3CL	B5ME19	914 aa	Known RBP	2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	MYO1C	O00159	1063 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	SNAP23	O00161	211 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	CBX4	O00257	560 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	PSMA7	O14818	248 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	KRT86	O43790	486 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	PHF2	O75151	1096 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	PRDM1	O75626	825 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	LCA5L	O95447	670 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	SYF2	O95926	243 aa	Known RBP	2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	TFRC	P02786	760 aa	Known RBP	2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	PARP1	P09874	1014 aa	Known RBP	2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	CCNE1	P24864	410 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	CTSS	P25774	331 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	CALML3	P27482	149 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	EPHB2	P29323	1055 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	CDC25A	P30304	524 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	KRT9	P35527	623 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	SREBF1	P36956	1147 aa		2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	IGHMBP2	P38935	993 aa	Known RBP	2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	CCT6A	P40227	531 aa	Known RBP	2.7	□□□□□ -1.98
SPG11-223	ENST00000560858	PRCP	P42785	496 aa		2.7	□□□□□ -1.98

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms