RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 RAB3IL1Q8TBN0 382 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 TCP10LQ8TDR4 215 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 C10orf82Q8WW14 230 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 PIWIL1Q96J94 861 aaKnown RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 TRIM55Q9BYV6 548 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 FAM49AQ9H0Q0 323 aaPredicted RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 DHX35Q9H5Z1 703 aaKnown RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 POPDC2Q9HBU9 364 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 NOD2Q9HC29 1040 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 SAR1AQ9NR31 198 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 SETD4Q9NVD3 440 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 ZC3H7BQ9UGR2 993 aaKnown RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 AP4E1Q9UPM8 1137 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 TTLL3Q9Y4R7 772 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 SCN1AP35498 2009 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 KPNA7A9QM74 516 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 H3BRJ5 948 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 PIRO00625 290 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 COPEO14579 308 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 KLF11O14901 512 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 HUS1O60921 280 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 ITGBL1O95965 494 aaPredicted RBP7.52□□□□□ -1.21
VPS13C-206ENST00000558338 APOEP02649 317 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 DHRS4L1P0CG22 281 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 GNAT1P11488 350 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 MLNP12872 115 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 WARSP23381 471 aaKnown RBP7.52□□□□□ -1.21
VPS13C-206ENST00000558338 IL4RP24394 825 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 L1CAMP32004 1257 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 GNL1P36915 607 aaPredicted RBP7.52□□□□□ -1.21
VPS13C-206ENST00000558338 MAGEA3P43357 314 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 CPT1AP50416 773 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 PTPN5P54829 565 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 AIF1P55008 147 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 SF3A3Q12874 501 aaKnown RBP eCLIP7.52□□□□□ -1.21
VPS13C-206ENST00000558338 SOWAHAQ2M3V2 549 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 KBTBD12Q3ZCT8 623 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 PPP6R3Q5H9R7 873 aaPredicted RBP7.52□□□□□ -1.21
VPS13C-206ENST00000558338 OTOAQ7RTW8 1153 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 CCNJLQ8IV13 435 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 GSDMBQ8TAX9 411 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 ERP27Q96DN0 273 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 CFAP36Q96G28 342 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 ZMAT2Q96NC0 199 aaKnown RBP7.52□□□□□ -1.21
VPS13C-206ENST00000558338 TMEM237Q96Q45 408 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 OSMRQ99650 979 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 TSSK1BQ9BXA7 367 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 EIF2AQ9BY44 585 aaKnown RBP7.52□□□□□ -1.21
VPS13C-206ENST00000558338 BRINP2Q9C0B6 783 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 MYLK2Q9H1R3 596 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 LRMDAQ9H2I8 198 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 MANSC1Q9H8J5 431 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 EIF2B3Q9NR50 452 aaKnown RBP7.52□□□□□ -1.21
VPS13C-206ENST00000558338 GPATCH2LQ9NWQ4 482 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 BAIAP2L1Q9UHR4 511 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 STAP1Q9ULZ2 295 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 RPL26L1Q9UNX3 145 aaKnown RBP7.52□□□□□ -1.21
VPS13C-206ENST00000558338 PIN4Q9Y237 131 aaKnown RBP7.52□□□□□ -1.21
VPS13C-206ENST00000558338 TRIP11Q15643 1979 aa7.52□□□□□ -1.21
VPS13C-206ENST00000558338 GLTPD2A6NH11 291 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 PPEF2O14830 753 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 ATP5BP06576 529 aaKnown RBP7.51□□□□□ -1.21
VPS13C-206ENST00000558338 APRTP07741 180 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 NEFHP12036 1026 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 IBSPP21815 317 aaPredicted RBP7.51□□□□□ -1.21
VPS13C-206ENST00000558338 CCND1P24385 295 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 ADRA1DP25100 572 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 ADORA2BP29275 332 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 CCNFP41002 786 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 MATKP42679 507 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 CRYBB1P53674 252 aaPredicted RBP7.51□□□□□ -1.21
VPS13C-206ENST00000558338 MGAT5Q09328 741 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 SEMA5AQ13591 1074 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 WLSQ5T9L3 541 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 ATG16L1Q676U5 607 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 FAM43BQ6ZT52 329 aaPredicted RBP7.51□□□□□ -1.21
VPS13C-206ENST00000558338 CYS1Q717R9 158 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 LIMS2Q7Z4I7 341 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 SCUBE3Q8IX30 993 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 CTAGE3PQ8IX95 158 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 ADGRF2Q8IZF7 708 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 TMEM130Q8N3G9 435 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 TAB3Q8N5C8 712 aaPredicted RBP7.51□□□□□ -1.21
VPS13C-206ENST00000558338 C7orf31Q8N865 590 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 TFB1MQ8WVM0 346 aaKnown RBP7.51□□□□□ -1.21
VPS13C-206ENST00000558338 KBTBD7Q8WVZ9 684 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 BRI3BPQ8WY22 251 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 C18orf25Q96B23 403 aaPredicted RBP7.51□□□□□ -1.21
VPS13C-206ENST00000558338 CSPG4P5Q96PW8 444 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 NAT9Q9BTE0 207 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 NXF3Q9H4D5 531 aaKnown RBP7.51□□□□□ -1.21
VPS13C-206ENST00000558338 ETNK1Q9HBU6 452 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 ZFP69BQ9UJL9 534 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 GRID1Q9ULK0 1009 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 GINS2Q9Y248 185 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 MTO1Q9Y2Z2 717 aaKnown RBP7.51□□□□□ -1.21
VPS13C-206ENST00000558338 PCDHA11Q9Y5I1 949 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 RAD54BQ9Y620 910 aa7.51□□□□□ -1.21
VPS13C-206ENST00000558338 A0A0A0MRY4 1105 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms