RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 C18orf65Q6ZTR6 163 aa4.48□□□□□ -1.69
SCFD1-216ENST00000555550 DCP1BQ8IZD4 617 aaKnown RBP4.48□□□□□ -1.69
SCFD1-216ENST00000555550 ATP11CQ8NB49 1132 aa4.48□□□□□ -1.69
SCFD1-216ENST00000555550 ZFYVE19Q96K21 471 aa4.48□□□□□ -1.69
SCFD1-216ENST00000555550 SELENOOQ9BVL4 669 aa4.48□□□□□ -1.69
SCFD1-216ENST00000555550 AS3MTQ9HBK9 375 aa4.48□□□□□ -1.69
SCFD1-216ENST00000555550 DDX21Q9NR30 783 aaKnown RBP eCLIP4.48□□□□□ -1.69
SCFD1-216ENST00000555550 TMOD4Q9NZQ9 345 aa4.48□□□□□ -1.69
SCFD1-216ENST00000555550 VPS4AQ9UN37 437 aa4.48□□□□□ -1.69
SCFD1-216ENST00000555550 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.48□□□□□ -1.69
SCFD1-216ENST00000555550 PRAMEF2O60811 474 aa4.47□□□□□ -1.69
SCFD1-216ENST00000555550 TMIGD3P0DMS9 266 aaPredicted RBP4.47□□□□□ -1.69
SCFD1-216ENST00000555550 ATF7P17544 494 aaPredicted RBP4.47□□□□□ -1.69
SCFD1-216ENST00000555550 GALNSP34059 522 aa4.47□□□□□ -1.69
SCFD1-216ENST00000555550 JAK3P52333 1124 aa4.47□□□□□ -1.69
SCFD1-216ENST00000555550 CFHR1Q03591 330 aa4.47□□□□□ -1.69
SCFD1-216ENST00000555550 ZNF543Q08ER8 600 aa4.47□□□□□ -1.69
SCFD1-216ENST00000555550 IFIT5Q13325 482 aaKnown RBP4.47□□□□□ -1.69
SCFD1-216ENST00000555550 FHL3Q13643 280 aa4.47□□□□□ -1.69
SCFD1-216ENST00000555550 KPNB1Q14974 876 aaKnown RBP4.47□□□□□ -1.69
SCFD1-216ENST00000555550 FAXCQ5TGI0 409 aa4.47□□□□□ -1.69
SCFD1-216ENST00000555550 GRHL2Q6ISB3 625 aa4.47□□□□□ -1.69
SCFD1-216ENST00000555550 ABHD5Q8WTS1 349 aa4.47□□□□□ -1.69
SCFD1-216ENST00000555550 IGFBPL1Q8WX77 278 aa4.47□□□□□ -1.69
SCFD1-216ENST00000555550 MAGEB5Q9BZ81 275 aa4.47□□□□□ -1.69
SCFD1-216ENST00000555550 NUAK2Q9H093 628 aa4.47□□□□□ -1.69
SCFD1-216ENST00000555550 ZBTB26Q9HCK0 441 aa4.47□□□□□ -1.69
SCFD1-216ENST00000555550 GAR1Q9NY12 217 aaKnown RBP4.47□□□□□ -1.69
SCFD1-216ENST00000555550 FZD4Q9ULV1 537 aa4.47□□□□□ -1.69
SCFD1-216ENST00000555550 COL15A1P39059 1388 aa4.46□□□□□ -1.7
SCFD1-216ENST00000555550 SLC28A2O43868 658 aa4.46□□□□□ -1.7
SCFD1-216ENST00000555550 CNOT3O75175 753 aaKnown RBP4.46□□□□□ -1.7
SCFD1-216ENST00000555550 IDEP14735 1019 aa4.46□□□□□ -1.7
SCFD1-216ENST00000555550 DRD1P21728 446 aa4.46□□□□□ -1.7
SCFD1-216ENST00000555550 HTR7P34969 479 aa4.46□□□□□ -1.7
SCFD1-216ENST00000555550 THBS4P35443 961 aa4.46□□□□□ -1.7
SCFD1-216ENST00000555550 STT3AP46977 705 aa4.46□□□□□ -1.7
SCFD1-216ENST00000555550 DGKQP52824 942 aa4.46□□□□□ -1.7
SCFD1-216ENST00000555550 YPEL5P62699 121 aa4.46□□□□□ -1.7
SCFD1-216ENST00000555550 MTX1Q13505 466 aa4.46□□□□□ -1.7
SCFD1-216ENST00000555550 BFSP2Q13515 415 aa4.46□□□□□ -1.7
SCFD1-216ENST00000555550 SAFBQ15424 915 aaKnown RBP eCLIP4.46□□□□□ -1.7
SCFD1-216ENST00000555550 BEND5Q7L4P6 421 aa4.46□□□□□ -1.7
SCFD1-216ENST00000555550 KRT28Q7Z3Y7 464 aa4.46□□□□□ -1.7
SCFD1-216ENST00000555550 SAP30LQ9HAJ7 183 aa4.46□□□□□ -1.7
SCFD1-216ENST00000555550 VPS45Q9NRW7 570 aa4.46□□□□□ -1.7
SCFD1-216ENST00000555550 PCDHB2Q9Y5E7 798 aa4.46□□□□□ -1.7
SCFD1-216ENST00000555550 HEMK1Q9Y5R4 338 aaPredicted RBP4.46□□□□□ -1.7
SCFD1-216ENST00000555550 APOL1O14791 398 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 AREL1O15033 823 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 INPPL1O15357 1258 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 PARNO95453 639 aaKnown RBP4.45□□□□□ -1.7
SCFD1-216ENST00000555550 SLC3A2P08195 630 aaKnown RBP4.45□□□□□ -1.7
SCFD1-216ENST00000555550 TGFB3P10600 412 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 MYL4P12829 197 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 FGFR2P21802 821 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 PBX1P40424 430 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 WDR5P61964 334 aaKnown RBP4.45□□□□□ -1.7
SCFD1-216ENST00000555550 RPS13P62277 151 aaKnown RBP4.45□□□□□ -1.7
SCFD1-216ENST00000555550 ACOX1Q15067 660 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 FAM110CQ1W6H9 321 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 P3H1Q32P28 736 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 SLC9C1Q4G0N8 1177 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 ADHFE1Q8IWW8 467 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 MMP21Q8N119 569 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.45□□□□□ -1.7
SCFD1-216ENST00000555550 SUN3Q8TAQ9 357 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 GRAMD1AQ96CP6 724 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 PRR11Q96HE9 360 aaPredicted RBP4.45□□□□□ -1.7
SCFD1-216ENST00000555550 CCDC136Q96JN2 1154 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 TBCBQ99426 244 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 EIF3CQ99613 913 aaKnown RBP4.45□□□□□ -1.7
SCFD1-216ENST00000555550 GJB4Q9NTQ9 266 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 ZBTB40Q9NUA8 1239 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 TXLNGQ9NUQ3 528 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 CHPF2Q9P2E5 772 aa4.45□□□□□ -1.7
SCFD1-216ENST00000555550 A0A087WZ62 844 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 CLCA1A8K7I4 914 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 ZSCAN9O15535 394 aaPredicted RBP4.44□□□□□ -1.7
SCFD1-216ENST00000555550 MYL3P08590 195 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 CD63P08962 238 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 TSHRP16473 764 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 TNFRSF1BP20333 461 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 CPA2P48052 419 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 PRIM2P49643 509 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 VPS41P49754 854 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 CASP5P51878 434 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 RAE1P78406 368 aaKnown RBP4.44□□□□□ -1.7
SCFD1-216ENST00000555550 MTAPQ13126 283 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 STIM1Q13586 685 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 DNASE1L3Q13609 305 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 CNGA3Q16281 694 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 ABLIM2Q6H8Q1 611 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 MRNIPQ6NTE8 343 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 USP17L6PQ6QN14 398 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 TXLNBQ8N3L3 684 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 SARGQ9BW04 601 aa4.44□□□□□ -1.7
SCFD1-216ENST00000555550 LACTBL1A8MY62 500 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 TTC34A8MYJ7 566 aa4.43□□□□□ -1.7
SCFD1-216ENST00000555550 KIF3BO15066 747 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms