RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 SLC5A1P13866 664 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 EGR1P18146 543 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 SLC8A1P32418 973 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 PBX1P40424 430 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 KCNJ4P48050 445 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 CPA2P48052 419 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 VPS41P49754 854 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 POLGP54098 1239 aaPredicted RBP3.23□□□□□ -1.89
CD44-238ENST00000534296 RAE1P78406 368 aaKnown RBP3.23□□□□□ -1.89
CD44-238ENST00000534296 MTAPQ13126 283 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 STIM1Q13586 685 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 UBE4AQ14139 1066 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 RABEP1Q15276 862 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 MAPKAPK3Q16644 382 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 Q4G0T1 1027 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 FAM209BQ5JX69 171 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 SYCP2LQ5T4T6 812 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 GORABQ5T7V8 394 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 IZUMO3Q5VZ72 239 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 IL31Q6EBC2 164 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 C11orf87Q6NUJ2 197 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 ZNF793Q6ZN11 406 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 DEF8Q6ZN54 512 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 RASGRP3Q8IV61 690 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 FAM186BQ8IYM0 893 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 OR2C3Q8N628 320 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 SAMD3Q8N6K7 520 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 RNF152Q8N8N0 203 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 OR52L2PQ8NGH6 319 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 C16orf52Q8NHV5 167 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.23□□□□□ -1.89
CD44-238ENST00000534296 AKAP1Q92667 903 aaKnown RBP eCLIP3.23□□□□□ -1.89
CD44-238ENST00000534296 TRIM63Q969Q1 353 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 CCDC138Q96M89 665 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 SIGLEC11Q96RL6 698 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 CERS4Q9HA82 394 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 ARFGAP3Q9NP61 516 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 NECTIN3Q9NQS3 549 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 VPS45Q9NRW7 570 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 TM7SF3Q9NS93 570 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 ABHD10Q9NUJ1 306 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 RGL1Q9NZL6 768 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 ZMYND8Q9ULU4 1186 aaPredicted RBP3.23□□□□□ -1.89
CD44-238ENST00000534296 VPS4AQ9UN37 437 aa3.23□□□□□ -1.89
CD44-238ENST00000534296 UBE2J1Q9Y385 318 aaPredicted RBP3.23□□□□□ -1.89
CD44-238ENST00000534296 ZNF335Q9H4Z2 1342 aaPredicted RBP3.22□□□□□ -1.89
CD44-238ENST00000534296 F8W810 466 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 TP73O15350 636 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 GLP2RO95838 553 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 PLAUP00749 431 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 HARSP12081 509 aaKnown RBP3.22□□□□□ -1.89
CD44-238ENST00000534296 TFEBP19484 476 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 EEF1GP26641 437 aaKnown RBP3.22□□□□□ -1.89
CD44-238ENST00000534296 NEK3P51956 506 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 RHBDL3P58872 404 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 TMEM196Q5HYL7 178 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 C10orf25Q5T742 122 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 GRHL2Q6ISB3 625 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 CCDC144NLQ6NUI1 221 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 HIBCHQ6NVY1 386 aaPredicted RBP3.22□□□□□ -1.89
CD44-238ENST00000534296 UBE2Q1Q7Z7E8 422 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 MYLK4Q86YV6 388 aaPredicted RBP3.22□□□□□ -1.89
CD44-238ENST00000534296 ADPRHL1Q8NDY3 354 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 MPLKIPQ8TAP9 179 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 BCAS4Q8TDM0 211 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 WDR60Q8WVS4 1066 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 LTV1Q96GA3 475 aaPredicted RBP3.22□□□□□ -1.89
CD44-238ENST00000534296 FAR2Q96K12 515 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 RIPOR3Q96MK2 946 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 FCRL5Q96RD9 977 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 RPS6KC1Q96S38 1066 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 ELAC2Q9BQ52 826 aaKnown RBP3.22□□□□□ -1.89
CD44-238ENST00000534296 TRMOQ9BU70 441 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 TUBB6Q9BUF5 446 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 HTATIP2Q9BUP3 242 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 SAP30LQ9HAJ7 183 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 ERVK-5Q9HDB9 667 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 NLRC4Q9NPP4 1024 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 POT1Q9NUX5 634 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 ASNSD1Q9NWL6 643 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 MTMR4Q9NYA4 1195 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 NFU1Q9UMS0 254 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 SLC8A2Q9UPR5 921 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 PCDHB7Q9Y5E2 793 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 PCDHB2Q9Y5E7 798 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 ZMYM2Q9UBW7 1377 aa3.22□□□□□ -1.89
CD44-238ENST00000534296 COL3A1P02461 1466 aaPredicted RBP3.22□□□□□ -1.89
CD44-238ENST00000534296 FER1L4A9Z1Z3 1794 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 A0A087WZ62 844 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 FAM234BA2RU67 622 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 OR2W5A6NFC9 320 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 NDST3O95803 873 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 CTSAP10619 480 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 PECAM1P16284 738 aaPredicted RBP3.21□□□□□ -1.9
CD44-238ENST00000534296 ATF7P17544 494 aaPredicted RBP3.21□□□□□ -1.9
CD44-238ENST00000534296 SFPQP23246 707 aaKnown RBP eCLIP3.21□□□□□ -1.9
CD44-238ENST00000534296 RPS6KB1P23443 525 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 GABRB3P28472 473 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 ME1P48163 572 aa3.21□□□□□ -1.9
CD44-238ENST00000534296 TM4SF4P48230 202 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms