RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 TMEM59LQ9UK28 342 aa8.66□□□□□ -1.02
NEDD8-207ENST00000533242 DNAJC12Q9UKB3 198 aa8.66□□□□□ -1.02
NEDD8-207ENST00000533242 CPSF3Q9UKF6 684 aaKnown RBP8.66□□□□□ -1.02
NEDD8-207ENST00000533242 NEUROG3Q9Y4Z2 214 aa8.66□□□□□ -1.02
NEDD8-207ENST00000533242 PCDHB5Q9Y5E4 795 aa8.66□□□□□ -1.02
NEDD8-207ENST00000533242 A0A0B4J269 797 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 GTPBP10A4D1E9 387 aaKnown RBP8.65□□□□□ -1.02
NEDD8-207ENST00000533242 BTNL10A8MVZ5 291 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 CYB561D2O14569 222 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 CDX4O14627 284 aaPredicted RBP8.65□□□□□ -1.02
NEDD8-207ENST00000533242 NFICP08651 508 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 ECHS1P30084 290 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 ACTN2P35609 894 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 IFNAR2P48551 515 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 TAF6P49848 677 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 GALCP54803 685 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 PPP3CAQ08209 521 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 NR1H3Q13133 447 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 ZNF77Q15935 545 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 TTMPQ5BVD1 217 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 C1orf220Q5T0J3 134 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 NAIF1Q69YI7 327 aaPredicted RBP8.65□□□□□ -1.02
NEDD8-207ENST00000533242 LRRC31Q6UY01 552 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 OSCP1Q8WVF1 389 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 IFT81Q8WYA0 676 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 ARHGEF26Q96DR7 871 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 SCNM1Q9BWG6 230 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 BAHCC1Q9P281 2608 aa8.65□□□□□ -1.02
NEDD8-207ENST00000533242 TOP3BO95985 862 aaKnown RBP8.65□□□□□ -1.03
NEDD8-207ENST00000533242 KRT14P02533 472 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 USP17L7P0C7H9 530 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 TCF3P15923 654 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 ABCB4P21439 1286 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 SOX5P35711 763 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 NFIL3Q16649 462 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 ARHGAP44Q17R89 818 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 DCAF12L1Q5VU92 463 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 DDX42Q86XP3 938 aaKnown RBP eCLIP8.65□□□□□ -1.03
NEDD8-207ENST00000533242 ARHGEF19Q8IW93 802 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 USP33Q8TEY7 942 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 SLC20A1Q8WUM9 679 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 KAT5Q92993 513 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 FAM212AQ96EL1 285 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 TRMT2BQ96GJ1 504 aaKnown RBP8.65□□□□□ -1.03
NEDD8-207ENST00000533242 FAM84AQ96KN4 292 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 ZIM3Q96PE6 472 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 SH3GL2Q99962 352 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 MSTO1Q9BUK6 570 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 INTS2Q9H0H0 1204 aaKnown RBP8.65□□□□□ -1.03
NEDD8-207ENST00000533242 ASB7Q9H672 318 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 ACP6Q9NPH0 428 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 CHORDC1Q9UHD1 332 aaPredicted RBP8.65□□□□□ -1.03
NEDD8-207ENST00000533242 ODF2LQ9ULJ1 636 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 INVSQ9Y283 1065 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 C2CD2Q9Y426 696 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 ABCA7Q8IZY2 2146 aa8.65□□□□□ -1.03
NEDD8-207ENST00000533242 TRAV19A0A0A6YYK7 116 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 K7ENM7 598 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 FOXN3O00409 490 aaPredicted RBP8.64□□□□□ -1.03
NEDD8-207ENST00000533242 HNRNPDLO14979 420 aaKnown RBP8.64□□□□□ -1.03
NEDD8-207ENST00000533242 BUB1BO60566 1050 aaPredicted RBP8.64□□□□□ -1.03
NEDD8-207ENST00000533242 BCKDHBP21953 392 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 TNFRSF8P28908 595 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 DPP6P42658 865 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 RPL10AP62906 217 aaKnown RBP8.64□□□□□ -1.03
NEDD8-207ENST00000533242 POU5F1Q01860 360 aaKnown RBP8.64□□□□□ -1.03
NEDD8-207ENST00000533242 LMAN2Q12907 356 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 RPS6KA1Q15418 735 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 NFE2Q16621 373 aaPredicted RBP8.64□□□□□ -1.03
NEDD8-207ENST00000533242 EML3Q32P44 896 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 SV2CQ496J9 727 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 WSCD1Q658N2 575 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 SLFN11Q7Z7L1 901 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 NT5DC3Q86UY8 548 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 SH2D3CQ8N5H7 860 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 DEFB124Q8NES8 71 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 CAVIN3Q969G5 261 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 DDX47Q9H0S4 455 aaKnown RBP8.64□□□□□ -1.03
NEDD8-207ENST00000533242 NEUROG2Q9H2A3 272 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 SLC32A1Q9H598 525 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 LUC7LQ9NQ29 371 aaKnown RBP8.64□□□□□ -1.03
NEDD8-207ENST00000533242 LHX6Q9UPM6 363 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 BZW2Q9Y6E2 419 aaKnown RBP8.64□□□□□ -1.03
NEDD8-207ENST00000533242 ZNF233A6NK53 670 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 PATE3B3GLJ2 98 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 CEP104O60308 925 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 EXOC3O60645 756 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 H2AFZP0C0S5 128 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 ABCD1P33897 745 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 STAT1P42224 750 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 DHPSP49366 369 aaPredicted RBP8.64□□□□□ -1.03
NEDD8-207ENST00000533242 GPR15P49685 360 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 IRX4P78413 519 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 TSPY1Q01534 308 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 UAP1L1Q3KQV9 507 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 DNAJC21Q5F1R6 531 aaKnown RBP8.64□□□□□ -1.03
NEDD8-207ENST00000533242 TTC19Q6DKK2 380 aaPredicted RBP8.64□□□□□ -1.03
NEDD8-207ENST00000533242 CCDC70Q6NSX1 233 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 H2AFVQ71UI9 128 aa8.64□□□□□ -1.03
NEDD8-207ENST00000533242 HS2ST1Q7LGA3 356 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms