RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 PMLP29590 882 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 CLCN1P35523 988 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 KRT9P35527 623 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 SOX5P35711 763 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 KIF11P52732 1056 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 MRPS21P82921 87 aaKnown RBP10.62□□□□□ -0.71
VPS28-204ENST00000526054 GSE1Q14687 1217 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 PKDCCQ504Y2 493 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 N4BP2L1Q5TBK1 243 aaPredicted RBP10.62□□□□□ -0.71
VPS28-204ENST00000526054 GPRIN1Q7Z2K8 1008 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 CYP2U1Q7Z449 544 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 SLC47A2Q86VL8 602 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 C12orf40Q86WS4 652 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 ADGRG2Q8IZP9 1017 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 SIX6OS1Q8N1H7 587 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 ALLCQ8N6M5 410 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 KCTD13Q8WZ19 329 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 IQCDQ96DY2 449 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 SPACA7Q96KW9 195 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 PNKPQ96T60 521 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 NUP58Q9BVL2 599 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 XPO4Q9C0E2 1151 aaKnown RBP10.62□□□□□ -0.71
VPS28-204ENST00000526054 NACA2Q9H009 215 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 PDCL3Q9H2J4 239 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 ACP6Q9NPH0 428 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 ARHGEF4Q9NR80 690 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 TLR8Q9NR97 1041 aaKnown RBP10.62□□□□□ -0.71
VPS28-204ENST00000526054 GMIPQ9P107 970 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 TBC1D14Q9P2M4 693 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 MYO6Q9UM54 1294 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 PCDHGC3Q9UN70 934 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 SCML2Q9UQR0 700 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 SH3BP1Q9Y3L3 701 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 TNRC6BQ9UPQ9 1833 aaKnown RBP10.62□□□□□ -0.71
VPS28-204ENST00000526054 E2F8A0AVK6 867 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 ANTXRLA6NF34 631 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 COCHO43405 550 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 GFPT2O94808 682 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 KCNK5O95279 499 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 KLF8O95600 359 aaPredicted RBP10.61□□□□□ -0.71
VPS28-204ENST00000526054 CYP11B1P15538 503 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 BCKDHBP21953 392 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 TIE1P35590 1138 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 SLC6A11P48066 632 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 PSEN1P49768 467 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 TUBP50607 506 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 TKTL1P51854 596 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 ADIGQ0VDE8 80 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 MESP2Q0VG99 397 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 HSF5Q4G112 596 aaPredicted RBP10.61□□□□□ -0.71
VPS28-204ENST00000526054 FIGNQ5HY92 759 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 RAB41Q5JT25 222 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 EOGTQ5NDL2 527 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 LY6G5CQ5SRR4 150 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 HECTD3Q5T447 861 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 PSAPL1Q6NUJ1 521 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 DENND1BQ6P3S1 775 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 RHBDF2Q6PJF5 856 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 CCDC186Q7Z3E2 898 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 ZNF677Q86XU0 584 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 SFTPA1Q8IWL2 248 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 ARHGAP18Q8N392 663 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 IL17RCQ8NAC3 791 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 TXNDC5Q8NBS9 432 aaKnown RBP10.61□□□□□ -0.71
VPS28-204ENST00000526054 SLC35F5Q8WV83 523 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 OTUB2Q96DC9 234 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 ZFRQ96KR1 1074 aaKnown RBP10.61□□□□□ -0.71
VPS28-204ENST00000526054 HSFY1Q96LI6 401 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 NOX5Q96PH1 765 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 EDEM3Q9BZQ6 932 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 POLMQ9NP87 494 aaPredicted RBP10.61□□□□□ -0.71
VPS28-204ENST00000526054 BCCIPQ9P287 314 aaKnown RBP eCLIP10.61□□□□□ -0.71
VPS28-204ENST00000526054 USP3Q9Y6I4 520 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 ABCA7Q8IZY2 2146 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 USP24Q9UPU5 2620 aa10.61□□□□□ -0.71
VPS28-204ENST00000526054 FRYQ5TBA9 3013 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 SGK1O00141 431 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 TULP2O00295 520 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 KHNYNO15037 678 aaKnown RBP10.6□□□□□ -0.71
VPS28-204ENST00000526054 FBXO21O94952 628 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 ZDHHC11BP0C7U3 371 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 FERP16591 822 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 PBX1P40424 430 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 GRIA2P42262 883 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 GPD2P43304 727 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 ACADSBP45954 432 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 DHPSP49366 369 aaPredicted RBP10.6□□□□□ -0.71
VPS28-204ENST00000526054 RGS7P49802 495 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 NOVA1P51513 510 aaKnown RBP10.6□□□□□ -0.71
VPS28-204ENST00000526054 SNX16P57768 344 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 GAD2Q05329 585 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 SNX30Q5VWJ9 437 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 DAB2IPQ5VWQ8 1189 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 BTBD8Q5XKL5 378 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 TMEM92Q6UXU6 159 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 TADA2BQ86TJ2 420 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 EPS8L1Q8TE68 723 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 STK32AQ8WU08 396 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 CDK5RAP1Q96SZ6 601 aaKnown RBP10.6□□□□□ -0.71
VPS28-204ENST00000526054 ULBP1Q9BZM6 244 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms