RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 NETO2Q8NC67 525 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 DIS3LQ8TF46 1054 aaKnown RBP13.02□□□□□ -0.32
USP53-209ENST00000514665 BCAS3Q9H6U6 928 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 RIC8BQ9NVN3 520 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 IRAK4Q9NWZ3 460 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 FARP1Q9Y4F1 1045 aaPredicted RBP13.02□□□□□ -0.32
USP53-209ENST00000514665 ENTPD5O75356 428 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 CELF2O95319 508 aaKnown RBP13.02□□□□□ -0.33
USP53-209ENST00000514665 PROCP04070 461 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 HSPA1AP0DMV8 641 aaKnown RBP13.02□□□□□ -0.33
USP53-209ENST00000514665 HSPA1BP0DMV9 641 aaKnown RBP13.02□□□□□ -0.33
USP53-209ENST00000514665 ERVK-10P10266 1014 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 IFNA8P32881 189 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 LAMB3Q13751 1172 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 GALNTL6Q49A17 601 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 GJC2Q5T442 439 aaPredicted RBP13.02□□□□□ -0.33
USP53-209ENST00000514665 FKBP1CQ5VVH2 108 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 EEF1DP3Q658K8 133 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 ILDR2Q71H61 639 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 YTHDF3Q7Z739 585 aaKnown RBP13.02□□□□□ -0.33
USP53-209ENST00000514665 PPP1R2P1Q96PQ5 205 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 APBA2Q99767 749 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 UBE2OQ9C0C9 1292 aaKnown RBP13.02□□□□□ -0.33
USP53-209ENST00000514665 PIF1Q9H611 641 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 DPYSL4O14531 572 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 PHGDHO43175 533 aaKnown RBP13.02□□□□□ -0.33
USP53-209ENST00000514665 SOAT2O75908 522 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 CACNA2D1P54289 1103 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 SLC34A1Q06495 639 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 PLEKHH3Q7Z736 793 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 SH3TC2Q8TF17 1288 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 STK32AQ8WU08 396 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 FBXO32Q969P5 355 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 OPTNQ96CV9 577 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 C17orf80Q9BSJ5 609 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 TBC1D10AQ9BXI6 508 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 MRGBPQ9NV56 204 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 CPA4Q9UI42 421 aa13.02□□□□□ -0.33
USP53-209ENST00000514665 TRMT6Q9UJA5 497 aaKnown RBP13.02□□□□□ -0.33
USP53-209ENST00000514665 GTF2H3Q13889 308 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 WASHC2DQ5SRD0 308 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 FOXR2Q6PJQ5 311 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 HS6ST3Q8IZP7 471 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 TAGAPQ8N103 731 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 ZNF555Q8NEP9 628 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 NMD3Q96D46 503 aaKnown RBP13.01□□□□□ -0.33
USP53-209ENST00000514665 MRIQ9BWK5 157 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 PACSIN3Q9UKS6 424 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 AGPSO00116 658 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 NR5A2O00482 541 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 FKBP6O75344 327 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 ASMTLO95671 621 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 TM4SF1P30408 202 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 CCR1P32246 355 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 OAZ1P54368 228 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 CDK16Q00536 496 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 DMC1Q14565 340 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 TATDN1Q6P1N9 297 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 SLC27A1Q6PCB7 646 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 KCNMB4Q86W47 210 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 ATP6V0D2Q8N8Y2 350 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 KYQ8NBH2 561 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 GTF3C2Q8WUA4 911 aaPredicted RBP13.01□□□□□ -0.33
USP53-209ENST00000514665 CINPQ9BW66 212 aaPredicted RBP13.01□□□□□ -0.33
USP53-209ENST00000514665 COG5Q9UP83 839 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 A0A1W2PPM1 405 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 ADM5C9JUS6 153 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 B4GALT5O43286 388 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 CLASP2O75122 1294 aaKnown RBP13.01□□□□□ -0.33
USP53-209ENST00000514665 UNC5CO95185 931 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 ALBP02768 609 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 ADCYAP1R1P41586 468 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 AASDHQ4L235 1098 aaPredicted RBP13.01□□□□□ -0.33
USP53-209ENST00000514665 FAM162AQ96A26 154 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 DDX50Q9BQ39 737 aaKnown RBP13.01□□□□□ -0.33
USP53-209ENST00000514665 BRD8Q9H0E9 1235 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 COG4Q9H9E3 785 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 CRLS1Q9UJA2 301 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 LSM7Q9UK45 103 aaKnown RBP13.01□□□□□ -0.33
USP53-209ENST00000514665 RNF112Q9ULX5 631 aa13.01□□□□□ -0.33
USP53-209ENST00000514665 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.01□□□□□ -0.33
USP53-209ENST00000514665 CNTNAP2Q9UHC6 1331 aa13□□□□□ -0.33
USP53-209ENST00000514665 SLC12A8A0AV02 714 aa13□□□□□ -0.33
USP53-209ENST00000514665 RECQL4O94761 1208 aa13□□□□□ -0.33
USP53-209ENST00000514665 CYBBP04839 570 aa13□□□□□ -0.33
USP53-209ENST00000514665 SLC2A3P11169 496 aa13□□□□□ -0.33
USP53-209ENST00000514665 YBX3P16989 372 aaKnown RBP eCLIP13□□□□□ -0.33
USP53-209ENST00000514665 ZNF23P17027 643 aa13□□□□□ -0.33
USP53-209ENST00000514665 ZNF470Q6ECI4 717 aa13□□□□□ -0.33
USP53-209ENST00000514665 ALLCQ8N6M5 410 aa13□□□□□ -0.33
USP53-209ENST00000514665 GLT1D1Q96MS3 346 aa13□□□□□ -0.33
USP53-209ENST00000514665 SH3GL2Q99962 352 aa13□□□□□ -0.33
USP53-209ENST00000514665 CDT1Q9H211 546 aa13□□□□□ -0.33
USP53-209ENST00000514665 PIDD1Q9HB75 910 aa13□□□□□ -0.33
USP53-209ENST00000514665 H0Y626 953 aa13□□□□□ -0.33
USP53-209ENST00000514665 DDHD2O94830 711 aa13□□□□□ -0.33
USP53-209ENST00000514665 TRIM16O95361 564 aa13□□□□□ -0.33
USP53-209ENST00000514665 BST1Q10588 318 aa13□□□□□ -0.33
USP53-209ENST00000514665 CDH17Q12864 832 aa13□□□□□ -0.33
USP53-209ENST00000514665 SLC45A4Q5BKX6 768 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms