RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 TSPAN1O60635 241 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 RNASEH2AO75792 299 aaKnown RBP3.06□□□□□ -1.92
NEDD4-208ENST00000508342 HIST1H2AGP0C0S8 130 aaPredicted RBP3.06□□□□□ -1.92
NEDD4-208ENST00000508342 STMN1P16949 149 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 HIST1H2ADP20671 130 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 CDC25AP30304 524 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 KRT20P35900 424 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 ATP5C1P36542 298 aaKnown RBP3.06□□□□□ -1.92
NEDD4-208ENST00000508342 MAGEA9P43362 315 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 CCT5P48643 541 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 TPI1P60174 286 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 YWHAGP61981 247 aaKnown RBP eCLIP3.06□□□□□ -1.92
NEDD4-208ENST00000508342 MYL5Q02045 173 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 NSUN2Q08J23 767 aaKnown RBP eCLIP3.06□□□□□ -1.92
NEDD4-208ENST00000508342 WDR72Q3MJ13 1102 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 PPP6R3Q5H9R7 873 aaPredicted RBP3.06□□□□□ -1.92
NEDD4-208ENST00000508342 BTNL9Q6UXG8 535 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 TRIM67Q6ZTA4 783 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 TAS2R42Q7RTR8 314 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 ACOT1Q86TX2 421 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 TRIM42Q8IWZ5 723 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 PHACTR4Q8IZ21 702 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 FBXL13Q8NEE6 735 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 KLHDC9Q8NEP7 349 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 VN1R2Q8NFZ6 395 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 SLC26A7Q8TE54 656 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 USP33Q8TEY7 942 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 OSCP1Q8WVF1 389 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 BTN2A2Q8WVV5 523 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 EMID1Q96A84 441 aaPredicted RBP3.06□□□□□ -1.92
NEDD4-208ENST00000508342 SHISA4Q96DD7 197 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 HIST1H2AHQ96KK5 128 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 ASB16Q96NS5 453 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 HIST1H2AJQ99878 128 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 BAG1Q99933 345 aaPredicted RBP3.06□□□□□ -1.92
NEDD4-208ENST00000508342 DUSP9Q99956 384 aaKnown RBP3.06□□□□□ -1.92
NEDD4-208ENST00000508342 CCDC3Q9BQI4 270 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 H2AFJQ9BTM1 129 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 ELAC1Q9H777 363 aaKnown RBP3.06□□□□□ -1.92
NEDD4-208ENST00000508342 NFKBIL1Q9UBC1 381 aaPredicted RBP3.06□□□□□ -1.92
NEDD4-208ENST00000508342 GTF2A1LQ9UNN4 478 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 HYOU1Q9Y4L1 999 aa3.06□□□□□ -1.92
NEDD4-208ENST00000508342 ARHGAP42A6NI28 874 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 RHPN2P1A8MT19 583 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 FAM86B1E9PN63 330 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 RASGRP1O95267 797 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 ARIH2O95376 493 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 HNRNPA1P09651 372 aaKnown RBP eCLIP3.05□□□□□ -1.92
NEDD4-208ENST00000508342 FAM86B2P0C5J1 330 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 SLC2A3P11169 496 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 HPGDP15428 266 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 KCNA2P16389 499 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 EPCAMP16422 314 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 CTGFP29279 349 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 ID4P47928 161 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 SLC11A1P49279 550 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 NCKAP1LP55160 1127 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 PHEXP78562 749 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 ZXDAP98168 799 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 IFT88Q13099 833 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 CAPRIN1Q14444 709 aaKnown RBP3.05□□□□□ -1.92
NEDD4-208ENST00000508342 LBRQ14739 615 aaKnown RBP3.05□□□□□ -1.92
NEDD4-208ENST00000508342 KNOP1Q1ED39 458 aaKnown RBP3.05□□□□□ -1.92
NEDD4-208ENST00000508342 MUM1Q2TAK8 710 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 CEP85LQ5SZL2 805 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 MAP3K21Q5TCX8 1036 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 FBXL19Q6PCT2 694 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 DBX2Q6ZNG2 339 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 STOX1Q6ZVD7 989 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 CCDC186Q7Z3E2 898 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 OR6P1Q8NGX9 317 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 PMM1Q92871 262 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 RUSC1Q9BVN2 902 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 FAM129AQ9BZQ8 928 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 RAB17Q9H0T7 212 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 ARRDC1-AS1Q9H2J1 176 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 DMAP1Q9NPF5 467 aaPredicted RBP3.05□□□□□ -1.92
NEDD4-208ENST00000508342 ARHGEF3Q9NR81 526 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 AGPAT5Q9NUQ2 364 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 TMEM51Q9NW97 253 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 ASNSD1Q9NWL6 643 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 SEPT3Q9UH03 358 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.05□□□□□ -1.92
NEDD4-208ENST00000508342 KPNA7A9QM74 516 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 OGTO15294 1046 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 GRM6O15303 877 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 PPP6R2O75170 966 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 ENDOD1O94919 500 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 SYF2O95926 243 aaKnown RBP3.05□□□□□ -1.92
NEDD4-208ENST00000508342 NR3C1P04150 777 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 EPHX1P07099 455 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 TNFSF9P41273 254 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 NPTX2P47972 431 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 MXI1P50539 228 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 PSMD7P51665 324 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 TBX4P57082 545 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 PRKAA1Q13131 559 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 NAA25Q14CX7 972 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 PDGFRLQ15198 375 aa3.05□□□□□ -1.92
NEDD4-208ENST00000508342 TMED2Q15363 201 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms