RNA–Protein interactions for RNA: ENST00000506063.1

TCOF1-208, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 4

Gene TCOF1, Length 526 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-208ENST00000506063 TOPORSQ9NS56 1045 aaPredicted RBP3.57□□□□□ -1.84
TCOF1-208ENST00000506063 NLGN3Q9NZ94 848 aa3.57□□□□□ -1.84
TCOF1-208ENST00000506063 SEPT10Q9P0V9 454 aa3.57□□□□□ -1.84
TCOF1-208ENST00000506063 ARHGAP20Q9P2F6 1191 aa3.57□□□□□ -1.84
TCOF1-208ENST00000506063 TBC1D14Q9P2M4 693 aa3.57□□□□□ -1.84
TCOF1-208ENST00000506063 SLC27A6Q9Y2P4 619 aa3.57□□□□□ -1.84
TCOF1-208ENST00000506063 PCDHB5Q9Y5E4 795 aa3.57□□□□□ -1.84
TCOF1-208ENST00000506063 V9GY48 417 aaPredicted RBP3.57□□□□□ -1.84
TCOF1-208ENST00000506063 LRP4O75096 1905 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 ZANQ9Y493 2812 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 PTPRJQ12913 1337 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 A0A087WWV3 80 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 TTC26A0AVF1 554 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 ERICH2A1L162 156 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 EFCAB7A8K855 629 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 PRSS44E7EML9 344 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 E7EWF7 191 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 NEDD8-MDP1E9PL57 170 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 M0R2N6 131 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 HIP1O00291 1037 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 PIRO00625 290 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 SCAMP1O15126 338 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 KCNAB3O43448 404 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 PRPF40AO75400 957 aaKnown RBP3.56□□□□□ -1.84
TCOF1-208ENST00000506063 NEBLO76041 1014 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 ODC1P11926 461 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 CYP3A5P20815 502 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 ITGA3P26006 1051 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 CCKBRP32239 447 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 LEPRP48357 1165 aaKnown RBP3.56□□□□□ -1.84
TCOF1-208ENST00000506063 DGKGP49619 791 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 PDE6CP51160 858 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 CCR5P51681 352 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 YARSP54577 528 aaKnown RBP3.56□□□□□ -1.84
TCOF1-208ENST00000506063 PDE1AP54750 535 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 MFAP3P55082 362 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 PPP2CBP62714 309 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 PPP2CAP67775 309 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 CDC20Q12834 499 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 EIF3IQ13347 325 aaKnown RBP3.56□□□□□ -1.84
TCOF1-208ENST00000506063 EPHA7Q15375 998 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 INPP5JQ15735 1006 aaPredicted RBP3.56□□□□□ -1.84
TCOF1-208ENST00000506063 CDKN3Q16667 212 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 PFKFB3Q16875 520 aaPredicted RBP3.56□□□□□ -1.84
TCOF1-208ENST00000506063 CFAP221Q4G0U5 840 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 SEZ6Q53EL9 994 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 MIIPQ5JXC2 388 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 ATP1A1-AS1Q5TC04 95 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 BTBD8Q5XKL5 378 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 WSCD1Q658N2 575 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 NUGGCQ68CJ6 796 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 DSTYKQ6XUX3 929 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 NUDT18Q6ZVK8 323 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 ASB18Q6ZVZ8 466 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 OTUD6AQ7L8S5 288 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 EFL1Q7Z2Z2 1120 aaKnown RBP3.56□□□□□ -1.84
TCOF1-208ENST00000506063 IQCHQ86VS3 1027 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 TGIF2LYQ8IUE0 185 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 ZBTB8OSQ8IWT0 167 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 FSIP1Q8NA03 581 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 APOBEC4Q8WW27 367 aaKnown RBP3.56□□□□□ -1.84
TCOF1-208ENST00000506063 JPH3Q8WXH2 748 aaPredicted RBP3.56□□□□□ -1.84
TCOF1-208ENST00000506063 HAS1Q92839 578 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 PMEPA1Q969W9 287 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 DYDC2Q96IM9 177 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 PIWIL1Q96J94 861 aaKnown RBP3.56□□□□□ -1.84
TCOF1-208ENST00000506063 SLC45A3Q96JT2 553 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 SERAC1Q96JX3 654 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 SLITRK1Q96PX8 696 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 ACO2Q99798 780 aaKnown RBP3.56□□□□□ -1.84
TCOF1-208ENST00000506063 HSD17B14Q9BPX1 270 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 CCDC94Q9BW85 323 aaPredicted RBP3.56□□□□□ -1.84
TCOF1-208ENST00000506063 SRRTQ9BXP5 876 aaKnown RBP3.56□□□□□ -1.84
TCOF1-208ENST00000506063 FOXP3Q9BZS1 431 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 CCSER1Q9C0I3 900 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 HAPLN2Q9GZV7 340 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 C2orf40Q9H1Z8 148 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 ZSWIM4Q9H7M6 989 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 RPF1Q9H9Y2 349 aaKnown RBP3.56□□□□□ -1.84
TCOF1-208ENST00000506063 CYLDQ9NQC7 956 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 AASDHPPTQ9NRN7 309 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 ANKEF1Q9NU02 776 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 TMEM30AQ9NV96 361 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 DAXXQ9UER7 740 aaPredicted RBP3.56□□□□□ -1.84
TCOF1-208ENST00000506063 PISDQ9UG56 409 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 RABGEF1Q9UJ41 708 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 CLEC4EQ9ULY5 219 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 KCNMB2Q9Y691 235 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 MEGF8Q7Z7M0 2845 aa3.56□□□□□ -1.84
TCOF1-208ENST00000506063 KMT2CQ8NEZ4 4911 aaKnown RBP3.55□□□□□ -1.84
TCOF1-208ENST00000506063 NBEAL2Q6ZNJ1 2754 aa3.55□□□□□ -1.84
TCOF1-208ENST00000506063 A0A1W2PQM1 296 aa3.55□□□□□ -1.84
TCOF1-208ENST00000506063 ZNF891A8MT65 544 aaPredicted RBP3.55□□□□□ -1.84
TCOF1-208ENST00000506063 D6RAR5 112 aa3.55□□□□□ -1.84
TCOF1-208ENST00000506063 NPC1O15118 1278 aa3.55□□□□□ -1.84
TCOF1-208ENST00000506063 COCHO43405 550 aa3.55□□□□□ -1.84
TCOF1-208ENST00000506063 GRID2O43424 1007 aa3.55□□□□□ -1.84
TCOF1-208ENST00000506063 HCRTO43612 131 aa3.55□□□□□ -1.84
TCOF1-208ENST00000506063 FAM189A1O60320 539 aa3.55□□□□□ -1.84
TCOF1-208ENST00000506063 USO1O60763 962 aaKnown RBP3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms