RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 TRMT10BQ6PF06 316 aaKnown RBP16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TMEM110Q86TL2 294 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SCUBE3Q8IX30 993 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MPP5Q8N3R9 675 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 DNAJC5GQ8N7S2 189 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CD99L2Q8TCZ2 262 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TBCBQ99426 244 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MRPL45Q9BRJ2 306 aaKnown RBP16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ZNF670Q9BS34 389 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MAGEB5Q9BZ81 275 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 FAM124BQ9H5Z6 455 aaPredicted RBP16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 DCLRE1BQ9H816 532 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MKS1Q9NXB0 559 aa16.65■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MDM4O15151 490 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 PAPSS1O43252 624 aaPredicted RBP16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 SNUPNO95149 360 aaKnown RBP16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 BST1Q10588 318 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 GJC2Q5T442 439 aaPredicted RBP16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ALYREFQ86V81 257 aaKnown RBP16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 NPLOC4Q8TAT6 608 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 SLC35F5Q8WV83 523 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 LRRC39Q96DD0 335 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 C7orf26Q96N11 449 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 NMUR2Q9GZQ4 415 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 NRDE2Q9H7Z3 1164 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ZNF395Q9H8N7 513 aaPredicted RBP16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 SIRPGQ9P1W8 387 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 FAM159BA6NKW6 160 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CYB561D2O14569 222 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 TNPO2O14787 897 aaKnown RBP16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 GYG2O15488 501 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 SMNDC1O75940 238 aaKnown RBP eCLIP16.64■□□□□ 0.254e-11■■□□□ 11.9
MSH5-SAPCD1-208ENST00000498473 MYCP01106 439 aaPredicted RBP16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 LMNAP02545 664 aaKnown RBP16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 GSTA2P09210 222 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 SDC4P31431 198 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 OCRLQ01968 901 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ARHGAP1Q07960 439 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 TEX44Q53QW1 395 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CMPK2Q5EBM0 449 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 PRAMEF19Q5SWL8 479 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ACOT1Q86TX2 421 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 TTC39CQ8N584 583 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ACAP3Q96P50 834 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 B3GNT5Q9BYG0 378 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 IQCGQ9H095 443 aaKnown RBP16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 FLRT1Q9NZU1 646 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 AKT3Q9Y243 479 aa16.64■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 LIN7AO14910 233 aaPredicted RBP16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 TSPAN1O60635 241 aa16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 GCATO75600 419 aa16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 LGALS2P05162 132 aa16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 RARBP10826 455 aa16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CYP2F1P24903 491 aa16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 L1CAMP32004 1257 aa16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 GBE1Q04446 702 aa16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 TTLL4Q14679 1199 aa16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 STILQ15468 1287 aa16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ACSBG2Q5FVE4 666 aa16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 PPP6R3Q5H9R7 873 aaPredicted RBP16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 DPP9Q86TI2 863 aa16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 E2F7Q96AV8 911 aa16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 EBNA1BP2Q99848 306 aaKnown RBP16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 FAM167BQ9BTA0 163 aa16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 SLC13A1Q9BZW2 595 aa16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 KCNK4Q9NYG8 393 aa16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ARMCX1Q9P291 453 aa16.63■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CAPN14A8MX76 684 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ZNF487B1APH4 448 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 PPEF2O14830 753 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ESRRAP11474 423 aaPredicted RBP16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 GCKP35557 465 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 GRIA1P42261 906 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ATXN1P54253 815 aaKnown RBP16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CCNA1P78396 465 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 KPNB1Q14974 876 aaKnown RBP16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 KYAT1Q16773 422 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 LGSNQ5TDP6 509 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 APBB1IPQ7Z5R6 666 aaPredicted RBP16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 PLEKHH3Q7Z736 793 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CDKL3Q8IVW4 592 aaPredicted RBP16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 MICAL1Q8TDZ2 1067 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ZNF296Q8WUU4 475 aaPredicted RBP16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 AFG1LQ8WV93 481 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 APBB2Q92870 758 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 KIF12Q96FN5 646 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 LPIN3Q9BQK8 851 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 C11orf84Q9BUA3 381 aaPredicted RBP16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 FAM49BQ9NUQ9 324 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 MTMR10Q9NXD2 777 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 COQ9O75208 318 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 TPSB2P20231 275 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ATP6V1C1P21283 382 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 RPS6KA3P51812 740 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 TPSAB1Q15661 275 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ANO7Q6IWH7 933 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 TREML1Q86YW5 311 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CFAP61Q8NHU2 1237 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 GSDMBQ8TAX9 411 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 WDR60Q8WVS4 1066 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms